View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7850A_low_507 (Length: 226)
Name: NF7850A_low_507
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_507 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 10597997 - 10598216
Alignment:
| Q |
1 |
atttgaagggactaatacatctggaaatgtacaaagtgaagtacatgctgaaaacgaggtattcattgaagaacccccagtcagagtgctcgatgaagac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
10597997 |
atttgaagggactaatacatctggaaatgtacaaagtgaagtacatgctgaaaacgaggtattcattgaagaactcccagtcggagtgctcgatgaagag |
10598096 |
T |
|
| Q |
101 |
gcggctatatctaaagagacaaatacctctgagactgaagtacaagccggaaatgaggtattcattgaagaacttccagtcggagtgctcgatgaagaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10598097 |
acggctatatctaaagagacaaatacctctgagactgaagtacaagccggaaatgaggtattcattgaagaacttccagtcggagtgctcgatgaagaca |
10598196 |
T |
|
| Q |
201 |
cggctacatctgaagagact |
220 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
10598197 |
cagctacatctgaagagact |
10598216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 37 - 174
Target Start/End: Original strand, 10598132 - 10598269
Alignment:
| Q |
37 |
tgaagtacatgctgaaaacgaggtattcattgaagaacccccagtcagagtgctcgatgaagacgcggctatatctaaagagacaaatacctctgagact |
136 |
Q |
| |
|
||||||||| || | ||| ||||||||||||||||||| |||||| ||||||||||||||||| | |||| |||| ||||||| ||||||||||| | | |
|
|
| T |
10598132 |
tgaagtacaagccggaaatgaggtattcattgaagaacttccagtcggagtgctcgatgaagacacagctacatctgaagagactaatacctctgaaaat |
10598231 |
T |
|
| Q |
137 |
gaagtacaagccggaaatgaggtattcattgaagaact |
174 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
10598232 |
gaagtacaagctggaaatgaggtattcattaaagaact |
10598269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 10597962 - 10598009
Alignment:
| Q |
173 |
cttccagtcggagtgctcgatgaagacacggctacatctgaagagact |
220 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| ||||| |||| |
|
|
| T |
10597962 |
cttccagttggagtgcttgatgaagacacggctacatttgaagggact |
10598009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 53388626 - 53388845
Alignment:
| Q |
1 |
atttgaagggactaatacatctggaaatgtacaaagtgaagtacatgctgaaaacgaggtattcattgaagaacccccagtcagagtgctcgatgaagac |
100 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| |||||||||| || |||||||||||||||||||||||||| || || |||| ||||||||||| |
|
|
| T |
53388626 |
atttgaagagactaatacatctgaaaatgtactaagtgaagtaagtgatgaaaacgaggtattcattgaagaacttcccgttggagtaatcgatgaagac |
53388725 |
T |
|
| Q |
101 |
gcggctatatctaaagagacaaatacctctgagactgaagtacaagccggaaatgaggtattcattgaagaacttccagtcggagtgctcgatgaagaca |
200 |
Q |
| |
|
||||| |||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
53388726 |
aaggctacatctgaagagactaatacatctgagactgaagtacaagccggaaatgaggtattcattgaagaactcccagttggagtgctcgatgaagaca |
53388825 |
T |
|
| Q |
201 |
cggctacatctgaagagact |
220 |
Q |
| |
|
| ||||||||||| ||||| |
|
|
| T |
53388826 |
caactacatctgaaaagact |
53388845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 166
Target Start/End: Original strand, 53388761 - 53388890
Alignment:
| Q |
37 |
tgaagtacatgctgaaaacgaggtattcattgaagaacccccagtcagagtgctcgatgaagacgcggctatatctaaagagacaaatacctctgagact |
136 |
Q |
| |
|
||||||||| || | ||| ||||||||||||||||||| |||||| ||||||||||||||||| | ||| |||| || |||| |||||||||| | | |
|
|
| T |
53388761 |
tgaagtacaagccggaaatgaggtattcattgaagaactcccagttggagtgctcgatgaagacacaactacatctgaaaagactaatacctctgtaaat |
53388860 |
T |
|
| Q |
137 |
gaagtacaagccggaaatgaggtattcatt |
166 |
Q |
| |
|
|| ||||||||| ||||||||||| ||||| |
|
|
| T |
53388861 |
gacgtacaagccagaaatgaggtactcatt |
53388890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 53388591 - 53388638
Alignment:
| Q |
173 |
cttccagtcggagtgctcgatgaagacacggctacatctgaagagact |
220 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
53388591 |
cttccagtcggagtgctcgatgaatacacggctacatttgaagagact |
53388638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University