View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_509 (Length: 226)
Name: NF7850A_low_509
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_509 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 12487600 - 12487819
Alignment:
| Q |
1 |
aaactaactagtggaatgtgagtgtgctttcaatggaaaattgacaatgcggtcttagtttgttttaaagtctgtcagtcaagttcaatacagtgttttc |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12487600 |
aaactaactagttgaatgtgagtgtgctttcaatggaaaattgacaatgtggtcttagtttgttttaaagtctgtcagtcaagttcaatacagtgttttc |
12487699 |
T |
|
| Q |
101 |
gaatgtcggccatggtggatattggtggctatttttgggctcgcccccatggtaaatatcggctgatgttgtaggtttttccgccataatcctctatgac |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12487700 |
gaatgtcggccatggtgcatattggtggctatttttgggctcgcccccatggtaaatatcggctgatgttgtaggtttttccgccataatcctctatgac |
12487799 |
T |
|
| Q |
201 |
ggcaccacagggcagccagt |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
12487800 |
ggcaccacagggcagccagt |
12487819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 12541417 - 12541599
Alignment:
| Q |
1 |
aaactaactagtggaatgtgagtgtgctttcaatggaaaattgacaatgcggtcttagtttgttttaaagtctgtcagtcaagttcaat-----acagtg |
95 |
Q |
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||||||| || | ||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12541417 |
aaactaaataattgaatgtgagtgtgcttt-aatggaaaattgacaacgtggtcttagtttgttttaaagtctgtcagtcaagttcaatacaatacagtg |
12541515 |
T |
|
| Q |
96 |
ttttcgaatgtcggccatggtggatattggtggctatttttgggctcgcccccatggtaaatatcggctgatgttgtaggtttt |
179 |
Q |
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|||||||||||||||||||| |||||| |||||| ||||||||||| |||| | | |||||||||| |||| |||||||||||| |
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| T |
12541516 |
ttttcgaatgtcggccatggaggatatcggtggcgatttttgggcttgccctctttgtaaatatcgactgacgttgtaggtttt |
12541599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 51 - 179
Target Start/End: Original strand, 12509274 - 12509402
Alignment:
| Q |
51 |
ggtcttagtttgttttaaagtctgtcagtcaagttcaatacagtgttttcgaatgtcggccatggtggatattggtggctatttttgggctcgcccccat |
150 |
Q |
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||||||| | ||||||||||| || ||||||||||||| | ||||| |||||| |||||||||| |||||| |||||| ||||||||||| |||||| | |
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| T |
12509274 |
ggtcttattatgttttaaagtttgagagtcaagttcaatcctgtgttatcgaatatcggccatggaggatatcggtggcgatttttgggcttgccccctt |
12509373 |
T |
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| Q |
151 |
ggtaaatatcggctgatgttgtaggtttt |
179 |
Q |
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||| |||||| |||| |||||||||||| |
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| T |
12509374 |
cgtagatatcgactgacgttgtaggtttt |
12509402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 12508899 - 12508940
Alignment:
| Q |
3 |
actaactagtggaatgtgagtgtgctttcaatggaaaattga |
44 |
Q |
| |
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||||| |||| ||||| ||||||||||||||||||||||||| |
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| T |
12508899 |
actaagtagttgaatgcgagtgtgctttcaatggaaaattga |
12508940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 34498964 - 34498884
Alignment:
| Q |
119 |
atattggtggctatttttgggctcgcccccatggtaaatatcggctgatgttgtaggtttttccgccataatcctctatga |
199 |
Q |
| |
|
|||| |||||| |||||||||||||| | |||||||||||||| ||| ||| |||| ||||| ||||||||||||||| |
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| T |
34498964 |
atatcggtggcggtttttgggctcgccgcaatggtaaatatcggtcgatattgcaggtctttccagcataatcctctatga |
34498884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 27610489 - 27610409
Alignment:
| Q |
119 |
atattggtggctatttttgggctcgcccccatggtaaatatcggctgatgttgtaggtttttccgccataatcctctatga |
199 |
Q |
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|||| |||||| |||||||||||||| | |||||||||||||| || ||| |||| ||||| ||||||||||||||| |
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| T |
27610489 |
atatcggtggcggtttttgggctcgccgcaatggtaaatatcggtcaatattgcaggtctttccagcataatcctctatga |
27610409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 40554471 - 40554379
Alignment:
| Q |
117 |
ggatattggtggctatttttgggctcgcccccatggtaaatatcggctgatgttgtaggtttttccgccataatcctctatgacggcaccaca |
209 |
Q |
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|||||| |||||| |||||||||||| || ||||| ||| ||||||||| | | ||| ||||||||||| |||| ||||||||| ||||| |
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| T |
40554471 |
ggatatcggtggcaatttttgggctctccgccatgcccaatttcggctgatatggcaggattttccgccatgatccgatatgacggcgccaca |
40554379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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