View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_510 (Length: 226)
Name: NF7850A_low_510
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_510 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 88 - 226
Target Start/End: Complemental strand, 4876684 - 4876546
Alignment:
| Q |
88 |
gtaaattgaagcaaatttgactctctagcggtataaatgctgcgttgtatagcattaacactcatcattcattaattatattcctaatgaagcaaacaat |
187 |
Q |
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| T |
4876684 |
gtaaattgaagcaaatttgactctctagcggtataaatgctgcgttgtatagcattaacactgatcattcattaattatattcctaatgaagcaaacaat |
4876585 |
T |
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| Q |
188 |
gatggaaatcttattgcattttgttttagggttgcttgg |
226 |
Q |
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| T |
4876584 |
gatggaaatctttttgcattttgttttagtgttgcttgg |
4876546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 4680191 - 4680243
Alignment:
| Q |
133 |
tgtatagcattaacactcatcattcattaat--tatattcctaatgaagcaaa |
183 |
Q |
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| T |
4680191 |
tgtatagcattagcactcatcattcattaattgtatattcctaatgaagcaaa |
4680243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 226
Target Start/End: Complemental strand, 4926546 - 4926427
Alignment:
| Q |
107 |
actctctagcggtataaatgctgcgttgtatagcattaacactcatcattcattaattatattcctaatgaagcaaacaatgatggaaatcttattgcat |
206 |
Q |
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| T |
4926546 |
actctctagcagtatatatgcttccttgcatagtattagtattcatcattcataaattgtatccctaatgaagcaaacaataatgagaatgttactgaat |
4926447 |
T |
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| Q |
207 |
tttgttttagggttgcttgg |
226 |
Q |
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| T |
4926446 |
tttcttttagcattgcttgg |
4926427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 10445377 - 10445468
Alignment:
| Q |
118 |
gtataaatgctgcgttgtatagcattaacactcatcattcattaattatattcctaatgaagcaaacaatgatggaaatcttattgcatttt |
209 |
Q |
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| T |
10445377 |
gtataaatgcttccttgtatagaattaacacttatcagtccataattgtatccctaatgaaacaaacaatgatgagaatgttactgcatttt |
10445468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 4725135 - 4725171
Alignment:
| Q |
156 |
tcattaattatattcctaatgaagcaaacaatgatgg |
192 |
Q |
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| T |
4725135 |
tcattaatagtattcctaatgaagcaaacaatgatgg |
4725171 |
T |
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