View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7850A_low_516 (Length: 225)
Name: NF7850A_low_516
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_516 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 40225578 - 40225396
Alignment:
| Q |
24 |
cccttaccctttcatctctgttcccttcttccattacaaaaattcattgaagcttggttaagaaatagctttgtcttttcaccatcattctctcattaaa |
123 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40225578 |
cccttatcctttcatctctgttcccttcttccattacaaaaattcattgaagcttggttaagaaatagctttgtcttttcaccatcattctctcattaaa |
40225479 |
T |
|
| Q |
124 |
ctcagtccttacgttacgcccacgttcttggtcaatttttgtaagtaattttttcctccacttatatatttggtgctatagct |
206 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40225478 |
ctcaaaccttacgttacgcccacgttcttggtcaatttttgtaagtaattttttcctccacttatatatttggtgctatagct |
40225396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University