View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_518 (Length: 224)
Name: NF7850A_low_518
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_518 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 42071871 - 42072075
Alignment:
| Q |
20 |
gtgtctgtgtcaatgcttcatagttgtttacattgttgtatgtgtgtgatgcagatgatgacacagaagtggatgattctcctgtagagcaagtcagact |
119 |
Q |
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| T |
42071871 |
gtgtctgtgtcaatgcttcatagttgtttacattgttgtatgtgtgtgatgcagatgatgacacagaagtggatgattctcctatagagcaagtcagact |
42071970 |
T |
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| Q |
120 |
aacagtgtcaataacagacgaccctacacaaccagcactaacatttaggacatgggttattggttttgtgtcttgcattgcccttgcctttgtgaaccaa |
219 |
Q |
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| T |
42071971 |
aacagtgtcaataacagacgaccctacacaaccagcactaacatttaggacatgggttattggttttgtgtcttgcattgcccttgcctttgtgaaccaa |
42072070 |
T |
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| Q |
220 |
ttctt |
224 |
Q |
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||||| |
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| T |
42072071 |
ttctt |
42072075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 66 - 224
Target Start/End: Original strand, 42055715 - 42055873
Alignment:
| Q |
66 |
tgatgcagatgatgacacagaagtggatgattctcctgtagagcaagtcagactaacagtgtcaataacagacgaccctacacaaccagcactaacattt |
165 |
Q |
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| T |
42055715 |
tgatgcagatgatgacacagaagtggatgattctccaatagagcaggtcagactaacagtgtcaacaacagacgacccaacacaaccagcactgacattt |
42055814 |
T |
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| Q |
166 |
aggacatgggttattggttttgtgtcttgcattgcccttgcctttgtgaaccaattctt |
224 |
Q |
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| T |
42055815 |
aggacatggattattggtttggcatgttgcattgtccttgcctttgtgaaccaattctt |
42055873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 66 - 224
Target Start/End: Original strand, 42080865 - 42081023
Alignment:
| Q |
66 |
tgatgcagatgatgacacagaagtggatgattctcctgtagagcaagtcagactaacagtgtcaataacagacgaccctacacaaccagcactaacattt |
165 |
Q |
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| T |
42080865 |
tgatgcagatgatgacacagaagtggatgattctccaatagagcaggtcagactaacagtgtcaacaacagacgacccaacacaaccagcactgacattt |
42080964 |
T |
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| Q |
166 |
aggacatgggttattggttttgtgtcttgcattgcccttgcctttgtgaaccaattctt |
224 |
Q |
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| T |
42080965 |
aggacatggattattggtttggcatgttgcattgtccttgcctttgtgaaccaattctt |
42081023 |
T |
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