View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_521 (Length: 223)
Name: NF7850A_low_521
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_521 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 26933440 - 26933650
Alignment:
| Q |
13 |
agtatcatagaagataagtggcctaatattccaattattactgcacgcttctcaaccataaaaatctgtttagagtttatttgcacccccatcttaaaga |
112 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26933440 |
agtaccatagaagataagtggcctgatattccaattattactgcacgcttctcaaccataaaaatctgtttagagtttatttgcacccccatcttaaaga |
26933539 |
T |
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| Q |
113 |
aataaattatcattccaaattctgcaaatgttgaaagtatcattatgcttgctgttggaaataacatctcaaaacttgtgttgtctcgacccaaaaataa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26933540 |
aataaattatcattccaaattctgcaaatgttgaaagtatcattatgcttgctgttggaaataacatctcaaaacttgtgttgtctcgacccaaaaataa |
26933639 |
T |
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| Q |
213 |
tggacccacta |
223 |
Q |
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||||||||||| |
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| T |
26933640 |
tggacccacta |
26933650 |
T |
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