View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_527 (Length: 222)
Name: NF7850A_low_527
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_527 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 1743806 - 1743591
Alignment:
| Q |
7 |
gattccactgttttattcctttctcggctactctcgagctttttaagtctcaaagccatagattttagtcacttcaatggtgaactagaagacatccttc |
106 |
Q |
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| T |
1743806 |
gattccactattctattcctttctcggctactctcgagatttttaaggctcaaagccatagattttagtcacttcaatggtgaactagaagacatccttc |
1743707 |
T |
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| Q |
107 |
atcaaatttcacaatctgggttggacctagatttgattaatctttccaaccaaagaacacttcctgttgatggattgcgagaactcggtacaaagatgat |
206 |
Q |
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| T |
1743706 |
atcaaatttcacaatctgggttggaccttgatttgattaatctttccaaccaaagaacacttcctgttgatggattgcgagaactcggtacaaagatgat |
1743607 |
T |
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| Q |
207 |
aaacttgagggttttg |
222 |
Q |
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| T |
1743606 |
aaacttgagggttttg |
1743591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 2006580 - 2006791
Alignment:
| Q |
11 |
ccactgttttattcctttctcggctactctcgagctttttaagtctcaaagccatagattttagtcacttcaatggtgaactagaagacatccttcatca |
110 |
Q |
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| T |
2006580 |
ccactgttccattccttcctcggctactcttgggatttttaaggctcaaagtcttagattttagccacttcaatggtgaacttgaaggcttgcttcatca |
2006679 |
T |
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| Q |
111 |
aatttcacaatctgggttggacctagatttgattaatctttccaaccaaagaacacttcctgttgatggattgcgagaactcggtacaaagatgataaac |
210 |
Q |
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| T |
2006680 |
agtttcacaatctgggctggaccttgatttcgttaatctttccaaccagagaacagttcctgttgatggattgcgagagctcggttcaaagatgataaac |
2006779 |
T |
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| Q |
211 |
ttgagggttttg |
222 |
Q |
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| T |
2006780 |
ctgagggttttg |
2006791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 1498323 - 1498419
Alignment:
| Q |
55 |
ctcaaagccatagattttagtcacttcaatggtgaactagaagacatccttcatcaaatttcacaatctgggttggacctagatttgattaatcttt |
151 |
Q |
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| T |
1498323 |
ctcaaagtcatagaccttagccacttcattggagaactagaaagcttgcttcatcaaattttataatctagattggaccttaatttggttaatcttt |
1498419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 1749055 - 1749015
Alignment:
| Q |
150 |
ttccaaccaaagaacacttcctgttgatggattgcgagaac |
190 |
Q |
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| T |
1749055 |
ttccaaccagagaacacttccccttgatggattgcgagaac |
1749015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 44577538 - 44577603
Alignment:
| Q |
76 |
cacttcaatggtgaactagaagacatccttcatcaaatttcacaatctgggttggacctagatttg |
141 |
Q |
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| T |
44577538 |
cacttcaatggtgaactagaatgcttgcttcatcaaatttcacaaactgggttggaccttgatttg |
44577603 |
T |
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