View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_533 (Length: 221)
Name: NF7850A_low_533
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_533 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 24639287 - 24639501
Alignment:
| Q |
7 |
atatgtaggaaacaatgtagaattgatatggggctaaaacaaagcatgaaaatatggctagcatagctgattctaggatgagacgactaagccgtaaatt |
106 |
Q |
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| T |
24639287 |
atatgtaggaaacaatgtagaattgatatggggctaaaacaaagcatgaaaatatggctagcatagctgattctaggatgagacgactaagccgtaaatt |
24639386 |
T |
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| Q |
107 |
ttgtttgtgttgctgtatcttttaggggatgttttagtgacatgagcatgtaatgcaggttaaatggtaaatacatgttgaagatgctgaggggaaaacg |
206 |
Q |
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| T |
24639387 |
ttgtttgtgttgctgtatcttttaggtgatgttttagtgacatgagcatgtaatgcaggttaaatggtaaatacatgttgaagatgctgaggggaaaacg |
24639486 |
T |
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| Q |
207 |
tttagtctttgttgg |
221 |
Q |
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| T |
24639487 |
tttagtctttgttgg |
24639501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 52491479 - 52491265
Alignment:
| Q |
7 |
atatgtaggaaacaatgtagaattgatatggggctaaaacaaagcatgaaaatatggctagcatagctgattctaggatgagacgactaagccgtaaatt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52491479 |
atatgtaggaaacaatgtagaattgatatggggctaaaacaaagcatgaaaatatggctagcatagctgattctaggatgagacgactaagccgtaaatt |
52491380 |
T |
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| Q |
107 |
ttgtttgtgttgctgtatcttttaggggatgttttagtgacatgagcatgtaatgcaggttaaatggtaaatacatgttgaagatgctgaggggaaaacg |
206 |
Q |
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| T |
52491379 |
ttgtttgtgttgctgtatcttttaggtgatgttttagtgacatgagcatgtaatgcaggttaaatggtaaatacatgttgaagatgctgaggggaaaacg |
52491280 |
T |
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| Q |
207 |
tttagtctttgttgg |
221 |
Q |
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| T |
52491279 |
tttagtctttgttgg |
52491265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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