View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_536 (Length: 220)
Name: NF7850A_low_536
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_536 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 39942847 - 39943063
Alignment:
| Q |
4 |
catcagtatttaactttattctgattctttgtcctgttatttttattaaacttgatactttccttgctatcataatgaaaccaacctcttaccttaaaaa |
103 |
Q |
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|||||||||| |||| |||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39942847 |
catcagtattgaactctattcttctactttttcctgttatttttattaaacttgatactttccttgctatcataatgaaaccaacctcttacctcaaaaa |
39942946 |
T |
|
| Q |
104 |
catagctttacccttttagctgtagttcaagcttcccctgaaagcagtgcacccgtaagtctgagccatgaccactagcacgtgatcaagacagaccatt |
203 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
39942947 |
catagctttacctttttagctgtagttcaagcttcccctgaaagcagtgcacccgtaagtctgagtcatgaccactagcacgtgatcaagacagatcatt |
39943046 |
T |
|
| Q |
204 |
ttgctatttttgctact |
220 |
Q |
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||||||||||||||||| |
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| T |
39943047 |
ttgctatttttgctact |
39943063 |
T |
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