View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_542 (Length: 219)
Name: NF7850A_low_542
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_542 |
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Alignment Details
Target: chr4 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 54428610 - 54428798
Alignment:
| Q |
20 |
cttatttgccatgtcatcatcatttgcaccgcttttat-----------tccacactcataacaatatggtattaagttgtgtttagatattgtaatgat |
108 |
Q |
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| T |
54428610 |
cttatttgccatgtcatcatcatttgcaccacttttatcaattgggcattccacactcataacaatatggtattaagttgtgtttagatattgtaatgat |
54428709 |
T |
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| Q |
109 |
tccctcnnnnnnngatattgtaatgatggatgtataaaaagttatttttgtactaagtaaactctttcaactctagagtgaagtctatg |
197 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54428710 |
tccctcaaaaaaagatattgtaatgatggatgtataagaagttatttttgtactaagtaaactctttcaactctagagtgaagtctatg |
54428798 |
T |
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