View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_543 (Length: 219)

Name: NF7850A_low_543
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_543
NF7850A_low_543
[»] chr8 (2 HSPs)
chr8 (7-94)||(35074281-35074368)
chr8 (140-196)||(35074179-35074235)
[»] chr3 (1 HSPs)
chr3 (20-78)||(38158955-38159013)


Alignment Details
Target: chr8 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 35074368 - 35074281
Alignment:
Q  7 ctttcgacctgtgatcagttccatcaaaactactccaaatgcgtaaacatccactttggttgtcactcttccggtagctacaagaaac 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35074368 ctttcgacctgtgatcagttccatcaaaactactccaaatgcgtaaacatccactttggttgtcactcttccagtagctacaagaaac 35074281  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 35074235 - 35074179
Alignment:
Q  140 ggaatcaatcacacacaatgcaacaagaatgaagcatatgttataatgtaacactta 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35074235 ggaatcaatcacacacaatgcaacaagaatgaagcatatgttataatgtaacactta 35074179  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 38158955 - 38159013
Alignment:
Q  20 atcagttccatcaaaactactccaaatgcgtaaacatccactttggttgtcactcttcc 78  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  38158955 atcagttccatcagaactactccaaatgcgtaaacatctactttggttgtcactcttcc 38159013  T

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