View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_548 (Length: 216)
Name: NF7850A_low_548
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_548 |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 24863648 - 24863754
Alignment:
| Q |
58 |
ggtccaatgtgcacacgtgccatgtttctccaccgtccattgttacctcgactcgtgtcacttttctaccaccccctacaacaaagtacaccatcaatgt |
157 |
Q |
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| T |
24863648 |
ggtccaatgtgcacacgtgccatgtttctccaccgtccattgttacctcgactcgtgtcacttttctaccaccccctataacaaagtacaccaccaatgt |
24863747 |
T |
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| Q |
158 |
cagtttt |
164 |
Q |
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||||||| |
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| T |
24863748 |
cagtttt |
24863754 |
T |
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Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 32988633 - 32988709
Alignment:
| Q |
58 |
ggtccaatgtgcacacgtgccatgtttctccaccgtccattgttacctcgactcgtgtcacttttctaccaccccct |
134 |
Q |
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||||||||||||| || ||||||||||| ||||||||||||||||| || || |||||||| ||||||||||||||| |
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| T |
32988633 |
ggtccaatgtgcatacttgccatgtttcaccaccgtccattgttacttcaacacgtgtcacctttctaccaccccct |
32988709 |
T |
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