View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_549 (Length: 216)
Name: NF7850A_low_549
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_549 |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 44650838 - 44650626
Alignment:
| Q |
1 |
aaagctacttcattagtagcaaaagcccaagttccatgcacaatgtgtgctgggtgtgagaatccatgccaccctcgnnnnnnnnnnnntccaaaagggt |
100 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| || |
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| T |
44650838 |
aaagctacttcattagtagcaaaagaccaagttccatgcacaatgtgtgctgagtgtgagaatccatgccaacctctaccacctccacctccaaaagtgt |
44650739 |
T |
|
| Q |
101 |
tagagtgcccatccccgccgtcgccgtnnnnnnntccaccaacgccaccgccatcacctcctctgccaccagcaatcgtcgaatgccctccacctccacc |
200 |
Q |
| |
|
||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44650738 |
tagagtgtccaccaccgccgtcgccgtcaccacctccaccaacgccaccgccatcacctcctctgccaccagcaatcgtcgaatgccctccacctccacc |
44650639 |
T |
|
| Q |
201 |
agctccaaagtca |
213 |
Q |
| |
|
||||||||||||| |
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| T |
44650638 |
agctccaaagtca |
44650626 |
T |
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