View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7850A_low_551 (Length: 214)
Name: NF7850A_low_551
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_551 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 109; Significance: 5e-55; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 22 - 165
Target Start/End: Original strand, 45643434 - 45643575
Alignment:
| Q |
22 |
gtttgttgccagagtcggcaatgccatagtgatagctaaaaagaagcataaaatcaaagcattagagaaagccattttaatcaaggaggctacgagaatc |
121 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
45643434 |
gtttgttgccagagtcggcaatggcatagtgatagctaaaaagaagcataaaaccaaagcattagagaaagccattttaatcaaggaagctacgaggatc |
45643533 |
T |
|
| Q |
122 |
ttgtttgagaattgagatataatgggttagctttatgtaattgc |
165 |
Q |
| |
|
|| ||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
45643534 |
ttatttgagaattgag--ataatggtttagctttatgtaattgc |
45643575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 45702896 - 45702816
Alignment:
| Q |
22 |
gtttgttgccagagtcggcaatgccatagtgatagctaaaaagaagcataaaatcaaagcattagagaaagccattttaat |
102 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| ||| |||| | ||||||||| |
|
|
| T |
45702896 |
gtttgttgccagagtcggcaatggcatagtgatcgctaaaaagaagcataaaaccaaagccttaaagaatgtcattttaat |
45702816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 45886708 - 45886628
Alignment:
| Q |
22 |
gtttgttgccagagtcggcaatgccatagtgatagctaaaaagaagcataaaatcaaagcattagagaaagccattttaat |
102 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| ||| |||| | ||||||||| |
|
|
| T |
45886708 |
gtttgttgccagagtcggcaatggcatagtgatcgctaaaaagaagcataaaaccaaagccttaaagaatgtcattttaat |
45886628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 45650751 - 45650815
Alignment:
| Q |
26 |
gttgccagagtcggcaatgccatagtgatagctaaaaagaagcataaaatcaaagcattagagaa |
90 |
Q |
| |
|
||||| ||||| |||| ||||| | |||| |||||||||||| ||||||||||| ||||||||| |
|
|
| T |
45650751 |
gttgcaagagttggcactgccacattgatcactaaaaagaagcctaaaatcaaaggattagagaa |
45650815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University