View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7850A_low_56 (Length: 405)
Name: NF7850A_low_56
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_56 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 218 - 403
Target Start/End: Complemental strand, 43921937 - 43921753
Alignment:
| Q |
218 |
aatactaaattcttgtacatgattatcgatttatctcagtgctgcactttttgtttaattggggacgagggagatttttattaatcaaatttacactaac |
317 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
43921937 |
aatacgaaattcttgtacatgattatcgatttatctcagtgctgcactttttgtttaattggggaagagggagatttttattaatcaaattgacactaat |
43921838 |
T |
|
| Q |
318 |
accatactccgagggatttgaagtttgaactaactagctgagcttatacggcgaagttcttaccactgagttaacacctcaggtgt |
403 |
Q |
| |
|
||| | ||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43921837 |
accgt-ctccgagggatttgaagtttgaactaagtatctgagcttatacggctaagttcttaccactgagttaacacctcaggtgt |
43921753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 62 - 173
Target Start/End: Complemental strand, 43922096 - 43921985
Alignment:
| Q |
62 |
gatgaaaatcaaggtttcaatttctatctccttttttattcatttcacctctcttattatcatcgatcgcactagaatccgtaattgcaccactagtatc |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43922096 |
gatgaaaatcaaggtttcaatttctatctccttttttattcatttcacctctcttattatcatcgatcgcactagaatccgtaattgcaccactagtatc |
43921997 |
T |
|
| Q |
162 |
ttatcgattcta |
173 |
Q |
| |
|
|||||||||||| |
|
|
| T |
43921996 |
ttatcgattcta |
43921985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University