View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_560 (Length: 212)
Name: NF7850A_low_560
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_560 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 212
Target Start/End: Complemental strand, 13960622 - 13960417
Alignment:
| Q |
7 |
tagtgcacctgtgaaatgacaactttggaaaacaaagccacttgagctgtcggatttggttcttccatcggcagctacgaaacattgttgttcttctaat |
106 |
Q |
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| T |
13960622 |
tagtgcacctgtgaaatgacaactttggaaaacaaagccacttgagctgtcagatttggttcttccatcggcagctacgaaacattgttgttcttctaat |
13960523 |
T |
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| Q |
107 |
ggttttcttacgattagtttgcagttttggaaaactgcaaaggcgtcaccgtagatcatgtcggttgtgccagagatgctgcagtcacggtagaattgac |
206 |
Q |
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| T |
13960522 |
ggttttcttacgattagtttgcagttttggaaaactgcaaaggcgtcaccgtagatcatgtcgattgtgccagagatgctgcagtcacggtagaattgac |
13960423 |
T |
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| Q |
207 |
gttggg |
212 |
Q |
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|||||| |
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| T |
13960422 |
gttggg |
13960417 |
T |
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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 212
Target Start/End: Complemental strand, 13967674 - 13967581
Alignment:
| Q |
119 |
attagtttgcagttttggaaaactgcaaaggcgtcaccgtagatcatgtcggttgtgccagagatgctgcagtcacggtagaattgacgttggg |
212 |
Q |
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| T |
13967674 |
attagtttgcaattttggaaaactccaaaggcgtcgccaaaaacaaagtcgattgtgccagagatggcgcagtcacggtagaattgacgttggg |
13967581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 49870992 - 49871028
Alignment:
| Q |
106 |
tggttttcttacgattagtttgcagttttggaaaact |
142 |
Q |
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| T |
49870992 |
tggttttctaacgatgagtttgcagttttggaaaact |
49871028 |
T |
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