View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7850A_low_561 (Length: 211)
Name: NF7850A_low_561
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_561 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 21205938 - 21206148
Alignment:
| Q |
1 |
aaggatttggtaactaccattcaaataaggatccacaaaaatttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggt |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21205938 |
aaggatttggtaactacgattcaaataaggatccacaaaaatttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggt |
21206037 |
T |
|
| Q |
101 |
tgctatcagattcctagcagataatccaggttggttcctagattattcgtcaaactatcaaaagtcattttggtttcaaagaatgttttagttcactttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21206038 |
tgctatcagattcctagcagataatccaggttggttcctagattattcgtcaaactatcaaaagtcattttggtttcgaagaatgttttagttcactttc |
21206137 |
T |
|
| Q |
201 |
ataaattaaca |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
21206138 |
ataaattaaca |
21206148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 21183464 - 21183674
Alignment:
| Q |
1 |
aaggatttggtaactaccattcaaataaggatccacaaaaatttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggt |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||| || |||| ||||| ||||||||||| || || || || ||| ||||||| ||||||||||||||||| |
|
|
| T |
21183464 |
aaggatttggtaactacgattcaaataaggaccccaaaaactttaatcttgttgatcctgtcgagagaaacacaattggtgtcccatctggtggatgggt |
21183563 |
T |
|
| Q |
101 |
tgctatcagattcctagcagataatccaggttggttcctagattattcgtcaaactatcaaaagtcattttggtttcaaagaatgttttagttcactttc |
200 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21183564 |
tgctatcagattccttgcagataatcctggttggttcctagattattcgtcaaactatcaaaagtcattttggtttcaaagaatgttttagttcactttc |
21183663 |
T |
|
| Q |
201 |
ataaattaaca |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
21183664 |
ataaattaaca |
21183674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 21854168 - 21854304
Alignment:
| Q |
1 |
aaggatttggtaactaccattcaaataaggatccacaaaaatttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggt |
100 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21854168 |
aaggatttggtaactttgattcaaatagtgatccacaaaattttaatcttgttgatcctgttgaaaggaatacagttggtgttccatctggtggatgggt |
21854267 |
T |
|
| Q |
101 |
tgctatcagattcctagcagataatccaggttggttc |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21854268 |
tgctatcagattcctagcagataatccaggttagttc |
21854304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 22635406 - 22635329
Alignment:
| Q |
54 |
gatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggt |
131 |
Q |
| |
|
||||| || ||||||||||| | |||||||||| ||||||||||||||||| | |||||||| ||||||||||||||| |
|
|
| T |
22635406 |
gatcctgtcgaaaggaatactgctggtgttccagctggtggatgggttgctttgagattccttgcagataatccaggt |
22635329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 22603743 - 22603840
Alignment:
| Q |
38 |
aaaatttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggttggt |
135 |
Q |
| |
|
||||||||| | |||||||| ||||||||||| || ||||||||||| ||||||| |||||||| || ||||| | || |||||||||||||||| |
|
|
| T |
22603743 |
aaaatttaatttggttgatcctgttgaaaggaacactgttggtgttcctgctggtggttgggttgccattagattttttgcggataatccaggttggt |
22603840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 4384465 - 4384554
Alignment:
| Q |
42 |
tttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggt |
131 |
Q |
| |
|
||||||||||||||||| ||||||||||| || |||||||| ||| ||||||| |||||||| || |||||| ||| |||||||||||| |
|
|
| T |
4384465 |
tttaaccttgttgatcctgttgaaaggaacactgttggtgtaccagctggtggttgggttgccattagattcagagctgataatccaggt |
4384554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 131
Target Start/End: Complemental strand, 24068937 - 24068848
Alignment:
| Q |
42 |
tttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggt |
131 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||| |||| ||| || |||||||| |||||||| || ||||||| || || ||||||||| |
|
|
| T |
24068937 |
tttaatcttgttgatcctgttgagaggaatactgttgctgtgccttctggtggttgggttgcgatacgattccttgctgacaatccaggt |
24068848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 29554653 - 29554733
Alignment:
| Q |
51 |
gttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggt |
131 |
Q |
| |
|
|||||||| || || || |||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||| |
|
|
| T |
29554653 |
gttgatcctgtggagagaaatacagttggtgttccatctggtggatggactgctatcagattcagggctgataatccaggt |
29554733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 136
Target Start/End: Original strand, 25093265 - 25093364
Alignment:
| Q |
37 |
aaaaatttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggttggtt |
136 |
Q |
| |
|
|||| ||||| ||||||||||| || || ||||||||||| ||||||||| |||| || ||| ||||||||||||| || |||||||||||| |||| |
|
|
| T |
25093265 |
aaaagtttaatcttgttgatcctgtggagaggaatacagtaggtgttccagctggaggttggactgctatcagattcaaggctgataatccaggtaggtt |
25093364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University