View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_569 (Length: 210)
Name: NF7850A_low_569
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_569 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 34575881 - 34575708
Alignment:
| Q |
17 |
aagaacaatgaatatatatatgttactgaatgtcaaaacttctctattttcccaataacatgtgtgctctttgaacatctgttag-attttctatgggga |
115 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
34575881 |
aagaacaatgaatatatat--gttactgaatgtcaaaacttctctattttcc-attaacatgtgtgctcttagaacatctgttagtattttctatgggga |
34575785 |
T |
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| Q |
116 |
tgcgcaaatgaattaaatataagaatgttaacacaaaatttaatatttaaactttgtttggtaatttggtaagaact |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34575784 |
tgcgcaaatgaattaaatataagaatgttaacacaaaatttaatatttaaactttgtttggtaatttggtaaaaact |
34575708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 34576668 - 34576495
Alignment:
| Q |
17 |
aagaacaatgaatatatatatgttactgaatgtcaaaacttctctattttcccaataacatgtgtgctctttgaacatctgttag-attttctatgggga |
115 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
34576668 |
aagaacaatgaatatatat--gttactgaatgtcaaaacttctctattttcg-attaacatgtgtgctcttagaacatctgttagtattttctatgggga |
34576572 |
T |
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| Q |
116 |
tgcgcaaatgaattaaatataagaatgttaacacaaaatttaatatttaaactttgtttggtaatttggtaagaact |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34576571 |
tgcgcaaatgaattaaatataagaatgttaacacaaaatttaatatttaaactttgtttggtaatttggtaaaaact |
34576495 |
T |
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