View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_570 (Length: 209)

Name: NF7850A_low_570
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_570
NF7850A_low_570
[»] chr4 (5 HSPs)
chr4 (1-121)||(7054380-7054500)
chr4 (119-209)||(7054248-7054338)
chr4 (125-208)||(16613393-16613476)
chr4 (125-197)||(1702401-1702473)
chr4 (125-197)||(9991053-9991125)
[»] scaffold0320 (2 HSPs)
scaffold0320 (1-121)||(13636-13756)
scaffold0320 (119-209)||(13798-13888)
[»] chr8 (4 HSPs)
chr8 (4-121)||(8212416-8212533)
chr8 (1-121)||(9290674-9290794)
chr8 (119-206)||(8212575-8212662)
chr8 (121-209)||(9290838-9290926)
[»] chr2 (4 HSPs)
chr2 (1-118)||(38980980-38981097)
chr2 (119-209)||(38981138-38981228)
chr2 (7-121)||(24867259-24867373)
chr2 (128-198)||(24867137-24867207)
[»] scaffold0442 (2 HSPs)
scaffold0442 (1-121)||(12223-12343)
scaffold0442 (119-209)||(12091-12181)
[»] chr3 (2 HSPs)
chr3 (1-121)||(51424866-51424986)
chr3 (119-209)||(51425028-51425118)
[»] chr6 (2 HSPs)
chr6 (9-117)||(24999465-24999573)
chr6 (125-174)||(24999629-24999678)


Alignment Details
Target: chr4 (Bit Score: 117; Significance: 8e-60; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 7054500 - 7054380
Alignment:
Q  1 ttgtggacattgagagtgttgtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaaga 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7054500 ttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaaga 7054401  T
Q  101 atgctaggttttttgaatcaa 121  Q
    |||||||||||||||||||||    
T  7054400 atgctaggttttttgaatcaa 7054380  T

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Target: chr4; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 7054338 - 7054248
Alignment:
Q  119 caagaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaa 209  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7054338 caagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaa 7054248  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 16613476 - 16613393
Alignment:
Q  125 agatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatga 208  Q
    ||||||||||||||||||| |||||||  ||||| ||||||||||||| |||| |||||||||||||||||||| || ||||||    
T  16613476 agatcaaagtaccaagagaaggtgcaagcaatatggaaacaaagccacgtagtaggatgaaaagaccaagtagtgcggggatga 16613393  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 1702473 - 1702401
Alignment:
Q  125 agatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtag 197  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||| |||| |||||||||| ||||||||    
T  1702473 agatcaaagtaccaagagaaggtgcaaaaaatatggaaacaaagccacgtagtaggatgaaaaggccaagtag 1702401  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 9991125 - 9991053
Alignment:
Q  125 agatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtag 197  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||| |||| |||||||||| ||||||||    
T  9991125 agatcaaagtaccaagagaaggtgcaaaaaatatggaaacaaagccacgtagttggatgaaaaggccaagtag 9991053  T

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Target: scaffold0320 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 13636 - 13756
Alignment:
Q  1 ttgtggacattgagagtgttgtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaaga 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13636 ttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatggtgaactttatatttaacaattttgattcatgtattgaaga 13735  T
Q  101 atgctaggttttttgaatcaa 121  Q
    |||||||||||||||||||||    
T  13736 atgctaggttttttgaatcaa 13756  T

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Target: scaffold0320; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 13798 - 13888
Alignment:
Q  119 caagaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaa 209  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  13798 caagaaagatcaaagtaccaagtgatggtgcaaacaatatagaaacaaagccacatagtgggatgaaaagacctagtagtacgagaatgaa 13888  T

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Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 4 - 121
Target Start/End: Original strand, 8212416 - 8212533
Alignment:
Q  4 tggacattgagagtgttgtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatg 103  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8212416 tggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaataatg 8212515  T
Q  104 ctaggttttttgaatcaa 121  Q
    ||||||||||||||||||    
T  8212516 ctaggttttttgaatcaa 8212533  T

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Target: chr8; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 9290674 - 9290794
Alignment:
Q  1 ttgtggacattgagagtgttgtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaaga 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9290674 ttgtggacattgagagtgtggtgtcaattgagatgatgaacacatattacactttgatggtgaactctatatttagcaattttgattcatgtattgaaga 9290773  T
Q  101 atgctaggttttttgaatcaa 121  Q
    |||||||||||||||||||||    
T  9290774 atgctaggttttttgaatcaa 9290794  T

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Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 8212575 - 8212662
Alignment:
Q  119 caagaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggat 206  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8212575 caagaaatatcaaagtaccaagagatggtgcaaaaaatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggat 8212662  T

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Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 121 - 209
Target Start/End: Original strand, 9290838 - 9290926
Alignment:
Q  121 agaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaa 209  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  9290838 agaaagatcaaagtaccaagagatggtgcaagcaatatagaaacaaagccacatagtgggatgaaaagatcaagtagtactaggatgaa 9290926  T

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Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 38980980 - 38981097
Alignment:
Q  1 ttgtggacattgagagtgttgtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaaga 100  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38980980 ttgttgacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaaga 38981079  T
Q  101 atgctaggttttttgaat 118  Q
    ||||||||||||||||||    
T  38981080 atgctaggttttttgaat 38981097  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 38981138 - 38981228
Alignment:
Q  119 caagaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaa 209  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38981138 caagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagccgcatagtgggatgaaaagaccaagtagtacgaggatgaa 38981228  T

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Target: chr2; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 24867373 - 24867259
Alignment:
Q  7 acattgagagtgttgtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgcta 106  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||||| ||||| ||| ||||||||||||| | ||    
T  24867373 acattgagagtgtggtgtcaattgagacgatgaacacgtcttacattttgatggtgaactttatatttaactatttttatttatgtattgaagaacgata 24867274  T
Q  107 ggttttttgaatcaa 121  Q
    ||| | |||||||||    
T  24867273 ggtctcttgaatcaa 24867259  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 24867207 - 24867137
Alignment:
Q  128 tcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagt 198  Q
    |||||| || || ||| |||||||| |||||   |||||||||| |||||||||||||||| |||||||||    
T  24867207 tcaaagaacaaaaagaaggtgcaaacaatatgagaacaaagccaaatagtgggatgaaaaggccaagtagt 24867137  T

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Target: scaffold0442 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 12343 - 12223
Alignment:
Q  1 ttgtggacattgagagtgttgtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaaga 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12343 ttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactctgatggtgaactctatatttaacaattttgattcatgtattgaaga 12244  T
Q  101 atgctaggttttttgaatcaa 121  Q
    |||||||||||||| ||||||    
T  12243 atgctaggttttttcaatcaa 12223  T

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Target: scaffold0442; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 12181 - 12091
Alignment:
Q  119 caagaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaa 209  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12181 caagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagccacatagttggatgaaaagaccaagtagtacgaggatgaa 12091  T

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Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 51424866 - 51424986
Alignment:
Q  1 ttgtggacattgagagtgttgtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaaga 100  Q
    ||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  51424866 ttgtggacattgagagtgtggtgtcaattgagacgatgaacgcatcttacactttgatggtgaactctatatttaacaagtttgattcatgaattgaaga 51424965  T
Q  101 atgctaggttttttgaatcaa 121  Q
    |||||||||||||||||||||    
T  51424966 atgctaggttttttgaatcaa 51424986  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 51425028 - 51425118
Alignment:
Q  119 caagaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaa 209  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  51425028 caagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagccacatagtgggatgaaaagatcaagtagtacaaggatgaa 51425118  T

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Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 24999465 - 24999573
Alignment:
Q  9 attgagagtgttgtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctagg 108  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||  ||||||||||| |||||||    
T  24999465 attgagagtgtggtgtcaattgagatgatgaacacatcttacactttgacgatgaactctatatttaacaattttgatttctgtattgaagagtgctagg 24999564  T
Q  109 ttttttgaa 117  Q
    ||| |||||    
T  24999565 tttcttgaa 24999573  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 24999629 - 24999678
Alignment:
Q  125 agatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacat 174  Q
    ||||||||||||||||||| |||||||| ||||| |||| ||||||||||    
T  24999629 agatcaaagtaccaagagaaggtgcaaacaatatggaaataaagccacat 24999678  T

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