View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_574 (Length: 209)
Name: NF7850A_low_574
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_574 |
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| [»] scaffold0312 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 52478263 - 52478151
Alignment:
| Q |
77 |
aaagtgatggtgtaaatgtccactgagaataacaacagttctagaccagttgctaataggccgtcaacaatggcatggcgtcactcatgaccatgaatat |
176 |
Q |
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| T |
52478263 |
aaagtgatggtgtaaatgtccactgagaataacaacagttctagaccagttgctaataggccgtcaacaatggcatggcgtcactcatgaccatgactat |
52478164 |
T |
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| Q |
177 |
ctaatgttaattt |
189 |
Q |
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| T |
52478163 |
ctaatgttaattt |
52478151 |
T |
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Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 42041050 - 42041130
Alignment:
| Q |
10 |
actgatatgaacatggcctataactatggaaaagtggctctctttgtgcttgcagccttagctggaaaaagtgatggtgta |
90 |
Q |
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| T |
42041050 |
actgatatgaacatggcctataactatggaaaagtggctctctttgtgcttgcagccttagctggaaaaagtgatggtgta |
42041130 |
T |
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Target: scaffold0312 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 4191 - 4264
Alignment:
| Q |
16 |
atgaacatggcctataactatggaaaagtggctctctttgtgcttgcagccttagctggaaaaagtgatggtgt |
89 |
Q |
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| T |
4191 |
atgaacatgtcctataactatggaaaagtagcacttttcattcttgcagccctaggaggaaaaagtgacggtgt |
4264 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 400585 - 400512
Alignment:
| Q |
16 |
atgaacatggcctataactatggaaaagtggctctctttgtgcttgcagccttagctggaaaaagtgatggtgt |
89 |
Q |
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| T |
400585 |
atgaacatgtcctataactatggaaaagtagcacttttcattcttgcagccctaggaggaaaaagtaatggtgt |
400512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 426359 - 426286
Alignment:
| Q |
16 |
atgaacatggcctataactatggaaaagtggctctctttgtgcttgcagccttagctggaaaaagtgatggtgt |
89 |
Q |
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| T |
426359 |
atgaacatgtcctataactatggaaaagtagcacttttcattcttgcagccctaggaggaaaaagtgacggtgt |
426286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 438574 - 438501
Alignment:
| Q |
16 |
atgaacatggcctataactatggaaaagtggctctctttgtgcttgcagccttagctggaaaaagtgatggtgt |
89 |
Q |
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| T |
438574 |
atgaacatgtcctataactatggaaaagtagcacttttcattcttgcagccctaggaggaaaaagtaatggtgt |
438501 |
T |
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