View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_575 (Length: 208)

Name: NF7850A_low_575
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_575
NF7850A_low_575
[»] chr2 (3 HSPs)
chr2 (5-208)||(4111557-4111760)
chr2 (54-208)||(27556087-27556244)
chr2 (56-208)||(28579975-28580128)
[»] chr3 (2 HSPs)
chr3 (54-201)||(5699611-5699760)
chr3 (54-150)||(6075476-6075575)
[»] chr7 (2 HSPs)
chr7 (54-196)||(11898102-11898246)
chr7 (56-208)||(5712861-5713014)
[»] chr8 (2 HSPs)
chr8 (51-180)||(15663234-15663366)
chr8 (56-194)||(15551149-15551290)
[»] chr4 (3 HSPs)
chr4 (56-150)||(18448525-18448622)
chr4 (54-137)||(11476179-11476263)
chr4 (51-201)||(20880795-20880945)
[»] chr5 (1 HSPs)
chr5 (64-138)||(19079994-19080069)


Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 4111760 - 4111557
Alignment:
Q  5 aaacaaagagaggatgaaagtcatcttgctgcttgccttcactttgcactgtaacatccttgaaccccacaaacaatattaaatgcaaataaacaattat 104  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4111760 aaacaaagagaggatgaaagtcatcttgctccttgccttcaccttgcacggtaacatccttgaaccccacaaacaatattaaatgcaaataaacaattat 4111661  T
Q  105 ttcaaaaggttcaagatgttacgtcatcattttcaaaaacatgcatcattcagatttataaaatctcgcagcggaatacaaacaatatctcatatatatc 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  4111660 ttcaaaaggttcaagatgttacgtcatcattttcaaaaacatgcataattcggatttataaaatctcgcagcggaatacaaacaatatcttatatatatc 4111561  T
Q  205 agat 208  Q
    ||||    
T  4111560 agat 4111557  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 208
Target Start/End: Original strand, 27556087 - 27556244
Alignment:
Q  54 tgtaacatccttgaaccccacaaacaatattaaatgcaaataaacaattatttcaaaag-gttcaagatgttacgtcatcattttc--aaaaacatgcat 150  Q
    ||||||| ||||| |||||| || ||||| | ||||||| ||||  |||   ||||||| ||||||||||| ||||||| ||||||  ||||||||||||    
T  27556087 tgtaacacccttgtaccccagaagcaataattaatgcaactaaatcatttaatcaaaagagttcaagatgtcacgtcataattttctcaaaaacatgcat 27556186  T
Q  151 cattcagattt-ataaaatctcgcagcggaatacaaacaatatctcatatatatcagat 208  Q
     |||| | ||| |||||| |||||||||||||| |||||| |||||| |||| ||||||    
T  27556187 aattcggttttcataaaa-ctcgcagcggaataaaaacaacatctcaaatatctcagat 27556244  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 208
Target Start/End: Complemental strand, 28580128 - 28579975
Alignment:
Q  56 taacatccttgaaccccacaaacaatattaaatgcaaataaa-caattatttcaaaaggttcaagatgttacgtcatcattttc-aaaaacatgcatcat 153  Q
    ||||| |||||||||||| ||  |||||| |||||||||||| || ||| || |||  |||||||||| |||||||||||||||  ||||||||||| ||    
T  28580128 taacacccttgaaccccaaaagtaatatttaatgcaaataaatcatttaatt-aaagagttcaagatgatacgtcatcattttcttaaaacatgcataat 28580030  T
Q  154 tcagatttataaaatctcgcagcggaatacaaacaatatctcatatatatcagat 208  Q
    |  | |||   |||||||||| || |||| |||||  |||||| |||| ||||||    
T  28580029 ttggttttcataaatctcgcaacgaaataaaaacagcatctcaaatatctcagat 28579975  T

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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 54 - 201
Target Start/End: Complemental strand, 5699760 - 5699611
Alignment:
Q  54 tgtaacatccttgaaccccacaaacaatattaaatgcaaataaacaattatttcaaaaggttcaagatgttacgtcatcattttc-aaaaacatgcatca 152  Q
    |||||||||||||||||| |||||||||||| |||||||||||||| |||||||| || |||||||||| |||  ||||||||||  ||||||||||| |    
T  5699760 tgtaacatccttgaaccctacaaacaatatttaatgcaaataaacagttatttcataatgttcaagatgctactccatcattttctcaaaacatgcataa 5699661  T
Q  153 ttcagattt-ataaaatctcgcagcggaatacaaacaatatctcatatat 201  Q
    ||  ||||| |||||| || | ||||||||| |||||| |||||| ||||    
T  5699660 tttggatttcataaaaacttgtagcggaataaaaacaacatctcaaatat 5699611  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 6075476 - 6075575
Alignment:
Q  54 tgtaacatccttgaaccccacaaacaatattaaatgcaaataaa-caattatttcaaaaggttcaagatgttacgtcatcattt--tcaaaaacatgcat 150  Q
    ||||||| | |||||||||||||| |||||| |||||||||||| || ||| || |||   ||||||||||||||| |||||||  ||||||||||||||    
T  6075476 tgtaacaccgttgaaccccacaaaaaatatttaatgcaaataaatcatttaattaaaagaattcaagatgttacgttatcattttctcaaaaacatgcat 6075575  T

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Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 54 - 196
Target Start/End: Original strand, 11898102 - 11898246
Alignment:
Q  54 tgtaacatccttgaaccccacaaacaatattaaatgcaaataaacaattatttcaaaagg-ttcaagatgttacgtcatcattt-tcaaaaacatgcatc 151  Q
    ||||||| |||||||||||||||  |||||| ||||| ||||||||||||||| |||||| ||||||||||||||| ||||    |||||||||||||      
T  11898102 tgtaacacccttgaaccccacaagaaatatttaatgctaataaacaattatttaaaaaggattcaagatgttacgttatcaaaactcaaaaacatgcaga 11898201  T
Q  152 attcagattt-ataaaatctcgcagcggaatacaaacaatatctca 196  Q
    |||||| ||| |||||| |||||||||||||| |||||||||||||    
T  11898202 attcagttttcataaaa-ctcgcagcggaataaaaacaatatctca 11898246  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 56 - 208
Target Start/End: Complemental strand, 5713014 - 5712861
Alignment:
Q  56 taacatccttgaaccccacaaacaatattaaatgcaaataaa-caattatttcaaaag-gttcaagatgttacgtcatcattttc-aaaaacatgcatca 152  Q
    ||||| ||||||||||||||| ||||||| |||||||||||| |||||| ||||||||  |||||||||||| ||| ||||||||  ||||||||||| |    
T  5713014 taacacccttgaaccccacaagcaatatttaatgcaaataaatcaatta-ttcaaaagaattcaagatgttatgtcttcattttctcaaaacatgcataa 5712916  T
Q  153 ttcagattt-ataaaatctcgcagcggaatacaaacaatatctcatatatatcagat 208  Q
    ||||| ||| |||||| |||| |||| |||| |||||| |||||| |||| ||||||    
T  5712915 ttcagttttcataaaa-ctcgtagcgaaata-aaacaacatctcaaatatctcagat 5712861  T

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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 51 - 180
Target Start/End: Complemental strand, 15663366 - 15663234
Alignment:
Q  51 cactgtaacatccttgaaccccacaaacaatattaaatgcaaataaacaattatttcaaaag-gttcaagatgttacgtcatcattt--tcaaaaacatg 147  Q
    |||| ||||| |||||||||| |||||||||||| ||||||||||||   ||   ||||||| ||| ||||||||||||||||||||  |||||||||||    
T  15663366 cactataacacccttgaaccctacaaacaatatttaatgcaaataaatcgtttaatcaaaagagtttaagatgttacgtcatcattttctcaaaaacatg 15663267  T
Q  148 catcattcag-atttataaaatctcgcagcggaa 180  Q
    ||| ||||||  ||||||||| ||||||||||||    
T  15663266 cataattcagtttttataaaa-ctcgcagcggaa 15663234  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 194
Target Start/End: Complemental strand, 15551290 - 15551149
Alignment:
Q  56 taacatccttgaacccc-acaaacaatattaaatgcaaataaacaattatttcaaaag-gttcaagatgttacgtcatcattttc-aaaaacatgcatca 152  Q
    ||||| ||||||||||| |||| ||||||| ||||||||||||  |||   ||||||| ||||||||||||||||||||||||||  ||||||||||| |    
T  15551290 taacacccttgaacccccacaagcaatatttaatgcaaataaatcatttaatcaaaagagttcaagatgttacgtcatcattttctcaaaacatgcataa 15551191  T
Q  153 ttcagattt-ataaaatctcgcagcggaatacaaacaatatct 194  Q
    | | | ||| |||||| |||| ||||||||| |||||||||||    
T  15551190 tcctgttttcataaaa-ctcgtagcggaataaaaacaatatct 15551149  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 150
Target Start/End: Original strand, 18448525 - 18448622
Alignment:
Q  56 taacatccttgaaccccacaaacaatattaaatgcaaataaacaattatttcaaaag-gttcaagatgttacgtcatcattt--tcaaaaacatgcat 150  Q
    ||||| ||||||||||||||| || |||| ||||||||||||  |||   ||||||| |||||||||| |||||||||||||  ||||||||||||||    
T  18448525 taacacccttgaaccccacaagcagtatttaatgcaaataaatcatttaatcaaaagagttcaagatgctacgtcatcattttctcaaaaacatgcat 18448622  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 11476179 - 11476263
Alignment:
Q  54 tgtaacatccttgaaccccacaaacaatattaaatgcaaataaacaattatttcaaaag-gttcaagatgttacgtcatcatttt 137  Q
    ||||||| |||||||| |||||||||||||| ||||||||||||  ||    ||||||| ||||||||||| |||||||||||||    
T  11476179 tgtaacacccttgaactccacaaacaatatttaatgcaaataaatcatctaatcaaaagagttcaagatgtcacgtcatcatttt 11476263  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 201
Target Start/End: Original strand, 20880795 - 20880945
Alignment:
Q  51 cactgtaacatccttgaaccccacaaacaatattaaatgcaaataaacaattatttcaaaag-gttcaagatgttacgtcatcattttcaaaaacatgca 149  Q
    |||||||||| |||||||||||||||  |||||  ||||||||||||  |||   |||||||  ||||||| ||||||||||  || |||||||||||||    
T  20880795 cactgtaacacccttgaaccccacaagaaatatgtaatgcaaataaatcatttaatcaaaagaattcaagacgttacgtcat-tttctcaaaaacatgca 20880893  T
Q  150 tcattcagatttataaaatctcgcagcggaatacaaacaatatctcatatat 201  Q
    | |||| | |||   |||||| ||| ||||||| |||||| |||||| ||||    
T  20880894 taattcggttttcataaatcttgcatcggaataaaaacaacatctcaaatat 20880945  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 19080069 - 19079994
Alignment:
Q  64 ttgaaccccacaaacaatattaaatgcaaataaa-caattatttcaaaag-gttcaagatgttacgtcatcattttc 138  Q
    |||||||||||||| |||||| |||||||||  | |||||| | |||||| |||||||||||||| |||||||||||    
T  19080069 ttgaaccccacaaataatatttaatgcaaattcatcaattaat-caaaagagttcaagatgttacatcatcattttc 19079994  T

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