View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_577 (Length: 208)
Name: NF7850A_low_577
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_577 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 6585688 - 6585520
Alignment:
| Q |
20 |
atcccccgttgaactgaaatatgtgaaacatttgacacataagaactcatcagaagcaccggaacataaagttgaatttctgagagtaaatacttgagta |
119 |
Q |
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| T |
6585688 |
atcccccgttgaactgaaatctgtgaaacatttgacacataagaactcatcagatgcaccggaacataaagttgaatttctgagagtagatacttgagta |
6585589 |
T |
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| Q |
120 |
gaatctctcttctggtgattaccgtctgaacttccagcatcaagtccttcactgttttcatgaatacat |
188 |
Q |
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| T |
6585588 |
gaatctctcttctggtgattaccgtctgaacttccagcatcaagtccttcaccgttttcatgaatacat |
6585520 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 51169285 - 51169328
Alignment:
| Q |
142 |
cgtctgaacttccagcatcaagtccttcactgttttcatgaata |
185 |
Q |
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| T |
51169285 |
cgtctgaacttccagcatcaagtcctctactgtttgcatgaata |
51169328 |
T |
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