View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_586 (Length: 206)

Name: NF7850A_low_586
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_586
NF7850A_low_586
[»] scaffold0026 (1 HSPs)
scaffold0026 (18-190)||(12701-12872)
[»] chr3 (6 HSPs)
chr3 (18-186)||(18914193-18914360)
chr3 (25-189)||(41455978-41456142)
chr3 (64-121)||(18136117-18136174)
chr3 (68-121)||(18129607-18129660)
chr3 (130-186)||(18136249-18136306)
chr3 (131-186)||(18129736-18129792)
[»] scaffold0634 (1 HSPs)
scaffold0634 (25-190)||(2747-2911)
[»] chr2 (3 HSPs)
chr2 (25-190)||(26582856-26583025)
chr2 (18-190)||(23169120-23169294)
chr2 (18-190)||(23580377-23580551)
[»] scaffold0249 (2 HSPs)
scaffold0249 (18-121)||(7564-7667)
scaffold0249 (130-186)||(7742-7798)
[»] scaffold1773 (1 HSPs)
scaffold1773 (73-190)||(153-269)
[»] chr8 (6 HSPs)
chr8 (73-190)||(19902808-19902924)
chr8 (73-190)||(23865615-23865732)
chr8 (64-119)||(19987990-19988045)
chr8 (65-115)||(20005423-20005473)
chr8 (137-186)||(20005563-20005612)
chr8 (98-189)||(17053780-17053870)
[»] chr7 (8 HSPs)
chr7 (73-190)||(12710780-12710896)
chr7 (73-190)||(13123851-13123967)
chr7 (73-190)||(13742686-13742803)
chr7 (73-189)||(13006489-13006604)
chr7 (25-116)||(18607248-18607339)
chr7 (25-116)||(147453-147544)
chr7 (62-116)||(16475929-16475983)
chr7 (77-121)||(13318007-13318051)
[»] scaffold0117 (1 HSPs)
scaffold0117 (73-190)||(9512-9628)
[»] scaffold0029 (1 HSPs)
scaffold0029 (73-190)||(110939-111055)
[»] chr6 (7 HSPs)
chr6 (73-190)||(29615079-29615195)
chr6 (73-189)||(19786751-19786866)
chr6 (73-189)||(12167420-12167535)
chr6 (73-189)||(19877513-19877628)
chr6 (73-189)||(19883289-19883404)
chr6 (73-189)||(19286329-19286444)
chr6 (18-105)||(25396343-25396430)
[»] chr1 (6 HSPs)
chr1 (64-121)||(20941657-20941714)
chr1 (73-189)||(41110997-41111112)
chr1 (25-116)||(20438236-20438327)
chr1 (131-186)||(23631145-23631200)
chr1 (26-79)||(11157328-11157381)
chr1 (130-186)||(20941789-20941846)
[»] scaffold0001 (1 HSPs)
scaffold0001 (73-190)||(174440-174557)
[»] chr4 (3 HSPs)
chr4 (73-190)||(8046777-8046893)
chr4 (64-121)||(14555881-14555938)
chr4 (25-113)||(18212523-18212611)
[»] scaffold0348 (2 HSPs)
scaffold0348 (64-121)||(1527-1584)
scaffold0348 (130-186)||(1659-1716)
[»] chr5 (4 HSPs)
chr5 (64-121)||(22232436-22232493)
chr5 (73-189)||(23527632-23527747)
chr5 (25-79)||(23112492-23112546)
chr5 (130-186)||(22232568-22232625)
[»] scaffold0077 (2 HSPs)
scaffold0077 (69-121)||(17972-18024)
scaffold0077 (69-121)||(23605-23657)
[»] scaffold0004 (1 HSPs)
scaffold0004 (21-79)||(116052-116110)
[»] scaffold0337 (1 HSPs)
scaffold0337 (25-116)||(9962-10053)
[»] scaffold0106 (2 HSPs)
scaffold0106 (124-186)||(46685-46748)
scaffold0106 (124-186)||(50958-51021)
[»] scaffold0028 (1 HSPs)
scaffold0028 (29-104)||(65265-65340)
[»] scaffold1427 (1 HSPs)
scaffold1427 (25-79)||(1207-1261)
[»] scaffold0139 (1 HSPs)
scaffold0139 (25-79)||(15802-15856)
[»] scaffold0020 (1 HSPs)
scaffold0020 (25-79)||(102733-102787)


Alignment Details
Target: scaffold0026 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 12701 - 12872
Alignment:
Q  18 aatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggat 117  Q
    |||||| |||||||||||||| |||||||||||||| ||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12701 aattttggagatgattgagtaagaaatcaagtgaatgtataact-attgaatgaaattgatgtatgcgcataattataattaattgtgtatgttctggat 12799  T
Q  118 tgttagaattttcggagtagtaagtcatatgaaatatatgtgtagttaagttgtatgtagatatacacaggtt 190  Q
    |||||||| | ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  12800 tgttagaactctcggagtagtaagtcatatgagatatatgtgtagttgagttgtatgtagatatacacaggtt 12872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 8e-60; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 18914360 - 18914193
Alignment:
Q  18 aatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggat 117  Q
    |||||| |||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18914360 aattttggagatgattgagtatgaaatcaagtgaatatatattatgttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggat 18914261  T
Q  118 tgttagaattttcggagtagtaagtcatatgaaatatatgtgtagttaagttgtatgtagatatacaca 186  Q
    |||| ||| || |||||| ||||||||||||||| |||||| | |||||||||||||||||||||||||    
T  18914260 tgttggaa-ttgcggagttgtaagtcatatgaaacatatgtattgttaagttgtatgtagatatacaca 18914193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 41455978 - 41456142
Alignment:
Q  25 gagatgattgagtatgaa-atcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttag 123  Q
    ||||| |||||||| ||| || ||||||||||| || | ||||||||||||||||||| | |||||||||||| |||||||| |||||||| |||||| |    
T  41455978 gagataattgagtaggaagattaagtgaatatacaact-attgaatgaaattgatgtaagcgcataattataaataattgtgaatgttctgaattgtttg 41456076  T
Q  124 aattttcggagtagtaagtcatatgaaatatatg-tgtagttaagttgtatgtagatatacacaggt 189  Q
     | || |||||||||||||||||||||| |||||   ||||| ||||||||||||||||||||||||    
T  41456077 -agttacggagtagtaagtcatatgaaacatatgcattagttgagttgtatgtagatatacacaggt 41456142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 18136117 - 18136174
Alignment:
Q  64 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 121  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18136117 ttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 18136174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 18129607 - 18129660
Alignment:
Q  68 atgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 121  Q
    |||||||||||||| | ||||||||||||||||||||| |||||||| ||||||    
T  18129607 atgaaattgatgtacgagcataattataattaattgtgaatgttctgaattgtt 18129660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 18136249 - 18136306
Alignment:
Q  130 cggagtagtaagtcatatgaaat-atatgtgtagttaagttgtatgtagatatacaca 186  Q
    |||||| |||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  18136249 cggagttgtaagtcatatgaaaacatatgcatggttaagttgtatgtagatatacaca 18136306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 18129736 - 18129792
Alignment:
Q  131 ggagtagtaagtcatatgaaata-tatgtgtagttaagttgtatgtagatatacaca 186  Q
    ||||| ||||||||||||||| | ||||  | |||||||||||||||||||||||||    
T  18129736 ggagttgtaagtcatatgaaaaaatatgcatggttaagttgtatgtagatatacaca 18129792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 25 - 190
Target Start/End: Complemental strand, 2911 - 2747
Alignment:
Q  25 gagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttaga 124  Q
    ||||||||||||| |||||||| |||||||||||||| |||||||||| |||||||||| |||||||||||| ||||||| |||||||||||||||| |     
T  2911 gagatgattgagtttgaaatcatgtgaatatataatt-attgaatgaatttgatgtatgcgcataattataaataattgtctatgttctggattgtttg- 2814  T
Q  125 attttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 190  Q
    | || |||||||||||||||||||||| ||||||  ||||| |||||||||||||||||||||||||    
T  2813 agttgcggagtagtaagtcatatgaaacatatgtattagttgagttgtatgtagatatacacaggtt 2747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 190
Target Start/End: Complemental strand, 26583025 - 26582856
Alignment:
Q  25 gagatgattgagtatgaaatcaagtgaatatataattta----ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgt 120  Q
    ||||||||||||||||||||| ||||||||||||  | |    | |||||  ||||||||||| |||||||||||| |||||||||||||||||||||||    
T  26583025 gagatgattgagtatgaaatcgagtgaatatatacataacatgtggaatgtgattgatgtatgcgcataattataaataattgtgtatgttctggattgt 26582926  T
Q  121 tagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 190  Q
    | | | || |||||||||||||||||| ||| ||||||  |||||||||||||||||||||||||||||||    
T  26582925 ttg-agttgcggagtagtaagtcatataaaacatatgtaatagttaagttgtatgtagatatacacaggtt 26582856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 23169120 - 23169294
Alignment:
Q  18 aatttttgagatgattgagtatgaaatcaagtgaat--atataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgg 115  Q
    |||||| |||||| ||||||||||||||| ||||||  ||||||  | | |||||  | ||||||||| |||||||||||| | ||||||||||| ||||    
T  23169120 aattttggagatgtttgagtatgaaatcatgtgaatgtatataacatgtggaatgtgaatgatgtatgcgcataattataaatgattgtgtatgtgctgg 23169219  T
Q  116 attgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 190  Q
    |||||| | | || ||||||||||||| |||||||||||||||  ||||  |||||||||| ||||||||| ||||    
T  23169220 attgtttg-agttgcggagtagtaagttatatgaaatatatgtattagtggagttgtatgtggatatacacgggtt 23169294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 23580377 - 23580551
Alignment:
Q  18 aatttttgagatgattgagtatgaaatcaagtgaat--atataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgg 115  Q
    |||||| |||||| ||||||||||||||| ||||||  ||||||  | | |||||  | ||||||||| |||||||||||| | ||||||||||| ||||    
T  23580377 aattttggagatgtttgagtatgaaatcatgtgaatgtatataacatgtggaatgtgaatgatgtatgcgcataattataaatgattgtgtatgtgctgg 23580476  T
Q  116 attgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 190  Q
    |||||| | | || ||||||||||||| |||||||||||||||  ||||  |||||||||| ||||||||| ||||    
T  23580477 attgtttg-agttgcggagtagtaagttatatgaaatatatgtattagtggagttgtatgtggatatacacgggtt 23580551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 7564 - 7667
Alignment:
Q  18 aatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggat 117  Q
    |||||| |||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| ||||||||||||||||||| ||||||||||| |    
T  7564 aattttggagatgattgagtatgaaatcaagtgaatatatagtatgttgaatgaaattgatgtatgagcataattataattaattgggtatgttctgggt 7663  T
Q  118 tgtt 121  Q
    ||||    
T  7664 tgtt 7667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 7742 - 7798
Alignment:
Q  130 cggagtagtaagtcatatgaaatatatgtgtagttaagttgtatgtagatatacaca 186  Q
    |||||| | ||||||||||||| |||||  | |||||||||||||||||||||||||    
T  7742 cggagttgcaagtcatatgaaacatatgcattgttaagttgtatgtagatatacaca 7798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 73 - 190
Target Start/End: Complemental strand, 269 - 153
Alignment:
Q  73 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 171  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||| ||  | | ||||||||||||||||||||||||||||  ||||| ||||||    
T  269 attgatgtgtgtgcataattataaataattgtgtatgttctggattgtt-gagctgt-ggagtagtaagtcatatgaaatatatgtaatagttgagttgt 172  T
Q  172 atgtagatatacacaggtt 190  Q
    |||||||||||||||||||    
T  171 atgtagatatacacaggtt 153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 73 - 190
Target Start/End: Original strand, 19902808 - 19902924
Alignment:
Q  73 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 171  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||  || || | |||||| ||||||||||||||||||||| |||||| ||||||    
T  19902808 attgatgtatgtgcatgattataaataattgtgtatgttctggattgtc-gagttgt-ggagtattaagtcatatgaaatatatgtagtagttgagttgt 19902905  T
Q  172 atgtagatatacacaggtt 190  Q
    |||||||||||||||||||    
T  19902906 atgtagatatacacaggtt 19902924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 73 - 190
Target Start/End: Complemental strand, 23865732 - 23865615
Alignment:
Q  73 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtc-atatgaaatatatg-tgtagttaagttg 170  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||   | || |||||||||||||| ||||||||||||||   ||||| |||||    
T  23865732 attgatgtatgtgcataattataaataattgtgtatgttctgaattgtt--gagttacggagtagtaagtcaatatgaaatatatgcattagttgagttg 23865635  T
Q  171 tatgtagatatacacaggtt 190  Q
    ||||||||||||||||||||    
T  23865634 tatgtagatatacacaggtt 23865615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 19987990 - 19988045
Alignment:
Q  64 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattg 119  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  19987990 ttgaatgaaattgatgtatgagcataattgtaattaattgtgtatgttctggattg 19988045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 20005423 - 20005473
Alignment:
Q  65 tgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgg 115  Q
    |||||||| ||||||||||||||| ||||| ||| ||||||||| ||||||    
T  20005423 tgaatgaacttgatgtatgtgcatgattatgattgattgtgtattttctgg 20005473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 20005563 - 20005612
Alignment:
Q  137 gtaagtcatatgaaatatatgtgtagttaagttgtatgtagatatacaca 186  Q
    ||||||||||| | |||||||  | |||||||||||||||||||||||||    
T  20005563 gtaagtcatattatatatatgcattgttaagttgtatgtagatatacaca 20005612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 17053870 - 17053780
Alignment:
Q  98 taattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggt 189  Q
    |||||||||| || |||||||||| || || | ||||||||| ||||||||| | |||||| || ||  ||||||||||||||||||||||||    
T  17053870 taattgtgtaagt-ctggattgtttgagttgt-ggagtagtatgtcatatgatacatatgtagtggtcgagttgtatgtagatatacacaggt 17053780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 73 - 190
Target Start/End: Original strand, 12710780 - 12710896
Alignment:
Q  73 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 171  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||  || || | |||||| ||||||||||||||||||||| |||||| ||||||    
T  12710780 attgatgtatgtgcataattataaataattgtgtatgttctgaattgtc-gagttat-ggagtattaagtcatatgaaatatatgtagtagttgagttgt 12710877  T
Q  172 atgtagatatacacaggtt 190  Q
    |||||||||||||||||||    
T  12710878 atgtagatatacacaggtt 12710896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 73 - 190
Target Start/End: Original strand, 13123851 - 13123967
Alignment:
Q  73 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 171  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||  || || | |||||| ||||||||||||||||||||| |||||| ||||||    
T  13123851 attgatgtatgtgcataattataaataattgtgtatgttctgaattgtc-gagttgt-ggagtattaagtcatatgaaatatatgtagtagttgagttgt 13123948  T
Q  172 atgtagatatacacaggtt 190  Q
    |||||||||||||||||||    
T  13123949 atgtagatatacacaggtt 13123967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 73 - 190
Target Start/End: Complemental strand, 13742803 - 13742686
Alignment:
Q  73 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 171  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||| || || | ||||||||||||||||||||| ||||||  ||||  ||||||    
T  13742803 attgatgtatgagcataattataaataattgtgtatgttctggattgtttgagttgt-ggagtagtaagtcatatgaaacatatgtaatagtcgagttgt 13742705  T
Q  172 atgtagatatacacaggtt 190  Q
    |||| ||||||||||||||    
T  13742704 atgttgatatacacaggtt 13742686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 13006604 - 13006489
Alignment:
Q  73 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 171  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||| | | |||||| || ||  ||||||    
T  13006604 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatattatacatatgtagtggtcgagttgt 13006507  T
Q  172 atgtagatatacacaggt 189  Q
    ||||||||||||||||||    
T  13006506 atgtagatatacacaggt 13006489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 18607339 - 18607248
Alignment:
Q  25 gagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgga 116  Q
    ||||||||||||||||||| |||||||| ||||| | | ||||||||| |||||| ||  |  | ||||| ||||||||||||| |||||||    
T  18607339 gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatgcattagtttgattatgattaattgtgtattttctgga 18607248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 147544 - 147453
Alignment:
Q  25 gagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgga 116  Q
    ||||||||||||||||||| |||||||| || || | | ||||||||| |||||| ||  |  | ||||| ||||||||||||| |||||||    
T  147544 gagatgattgagtatgaaaccaagtgaacatgtactatgttgaatgaacttgatgcattagtttgattatgattaattgtgtattttctgga 147453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 16475929 - 16475983
Alignment:
Q  62 tattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgga 116  Q
    ||||||||||| | |||||||| |||| ||||| ||||||||||||| |||||||    
T  16475929 tattgaatgaactcgatgtatgagcatgattatgattaattgtgtattttctgga 16475983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 13318051 - 13318007
Alignment:
Q  77 atgtatgtgcataattataattaattgtgtatgttctggattgtt 121  Q
    ||||||| |||||||||| ||||||||||||  ||||||||||||    
T  13318051 atgtatgcgcataattatgattaattgtgtaatttctggattgtt 13318007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 73 - 190
Target Start/End: Original strand, 9512 - 9628
Alignment:
Q  73 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 171  Q
    |||||||||||||||| ||||||| ||||||| |||||||||||||||  || || | |||||| ||||||||||||||||||||| |||||| ||||||    
T  9512 attgatgtatgtgcatgattataaataattgtatatgttctggattgtc-gagttgt-ggagtattaagtcatatgaaatatatgtagtagttgagttgt 9609  T
Q  172 atgtagatatacacaggtt 190  Q
    |||||||||||||||||||    
T  9610 atgtagatatacacaggtt 9628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 73 - 190
Target Start/End: Complemental strand, 111055 - 110939
Alignment:
Q  73 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 171  Q
    |||||||||||||| ||||||||| |||||||||| ||||||||||||  || || | ||||||||||||||||||||||||||||  ||||| ||||||    
T  111055 attgatgtatgtgcgtaattataaataattgtgtaggttctggattgtc-gagttgt-ggagtagtaagtcatatgaaatatatgtaatagttgagttgt 110958  T
Q  172 atgtagatatacacaggtt 190  Q
    |||||||||||||||||||    
T  110957 atgtagatatacacaggtt 110939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 9e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 73 - 190
Target Start/End: Original strand, 29615079 - 29615195
Alignment:
Q  73 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 171  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||   | || ||||| |||||||||||||||| ||||||  ||||  ||||||    
T  29615079 attgatgtatgtgaataattataaataattgtgtatgttctggattgtt--gagttgcggagcagtaagtcatatgaaacatatgtaatagtcgagttgt 29615176  T
Q  172 atgtagatatacacaggtt 190  Q
    |||||||||||||||||||    
T  29615177 atgtagatatacacaggtt 29615195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 19786751 - 19786866
Alignment:
Q  73 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 171  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| |||||  ||||||    
T  19786751 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttat-ggagtagtaagtcatatgatacatatgtagtagtcgagttgt 19786848  T
Q  172 atgtagatatacacaggt 189  Q
    ||||||||||||||||||    
T  19786849 atgtagatatacacaggt 19786866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 12167535 - 12167420
Alignment:
Q  73 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 171  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  12167535 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 12167438  T
Q  172 atgtagatatacacaggt 189  Q
    ||||||||||||||||||    
T  12167437 atgtagatatacacaggt 12167420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 19877628 - 19877513
Alignment:
Q  73 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 171  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  19877628 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 19877531  T
Q  172 atgtagatatacacaggt 189  Q
    ||||||||||||||||||    
T  19877530 atgtagatatacacaggt 19877513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 19883404 - 19883289
Alignment:
Q  73 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 171  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  19883404 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 19883307  T
Q  172 atgtagatatacacaggt 189  Q
    ||||||||||||||||||    
T  19883306 atgtagatatacacaggt 19883289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 19286444 - 19286329
Alignment:
Q  73 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 171  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||| | | |||||| || ||  ||||||    
T  19286444 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatattatacatatgtagtggtcgagttgt 19286347  T
Q  172 atgtagatatacacaggt 189  Q
    ||||||||||||||||||    
T  19286346 atgtagatatacacaggt 19286329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 25396430 - 25396343
Alignment:
Q  18 aatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtg 105  Q
    |||||| || |||||||||||||||| |||||||||||||| |   ||||||||| |||||| ||  | || ||||| ||||||||||    
T  25396430 aattttggatatgattgagtatgaaaccaagtgaatatatactaggttgaatgaacttgatgcattagtatgattattattaattgtg 25396343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 20941657 - 20941714
Alignment:
Q  64 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 121  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20941657 ttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 20941714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 41111112 - 41110997
Alignment:
Q  73 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 171  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  41111112 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 41111015  T
Q  172 atgtagatatacacaggt 189  Q
    ||||||||||||||||||    
T  41111014 atgtagatatacacaggt 41110997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 20438236 - 20438327
Alignment:
Q  25 gagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgga 116  Q
    ||||||||||||||||||| |||||||| ||||| | | ||||||||| || ||| ||  |  | ||||| ||||||||||||| |||||||    
T  20438236 gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaactttatgcattagtttgattatgattaattgtgtattttctgga 20438327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 23631200 - 23631145
Alignment:
Q  131 ggagtagtaagtcatatgaaatatatgtgtagttaagttgtatgtagatatacaca 186  Q
    ||||| ||||||||||| | |||||||  | |||||||||||||||||||||||||    
T  23631200 ggagttgtaagtcatattatatatatgcattgttaagttgtatgtagatatacaca 23631145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 11157381 - 11157328
Alignment:
Q  26 agatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 79  Q
    |||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  11157381 agatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 11157328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 20941789 - 20941846
Alignment:
Q  130 cggagtagtaagtcatatgaaat-atatgtgtagttaagttgtatgtagatatacaca 186  Q
    |||||| |||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  20941789 cggagttgtaagtcatatgaaaacatatgcattgttaagttgtatgtagatatacaca 20941846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 190
Target Start/End: Original strand, 174440 - 174557
Alignment:
Q  73 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 171  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| | | || ||||| |||||||||| ||||| ||||||  ||||  | ||||    
T  174440 attgatgtatgtgcataattataaataattgtgtatgttctggattgtttg-agttgcggagcagtaagtcatttgaaaaatatgtaatagtcgaattgt 174538  T
Q  172 atgtagatatacacaggtt 190  Q
    ||||||| ||||| |||||    
T  174539 atgtagagatacaaaggtt 174557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 190
Target Start/End: Original strand, 8046777 - 8046893
Alignment:
Q  73 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 171  Q
    |||||||| ||||||||||||||| |||||||||||| | ||||||  | || || | ||||||||||||||||||||||||||||  ||||  ||||||    
T  8046777 attgatgtgtgtgcataattataaataattgtgtatgatttggattact-gagttgt-ggagtagtaagtcatatgaaatatatgtaatagtcgagttgt 8046874  T
Q  172 atgtagatatacacaggtt 190  Q
    |||||||||||||||||||    
T  8046875 atgtagatatacacaggtt 8046893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 14555881 - 14555938
Alignment:
Q  64 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 121  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  14555881 ttgaatgaaattgatgtatgagcataattataattaattgtgtttgttctggattgtt 14555938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 18212611 - 18212523
Alignment:
Q  25 gagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttct 113  Q
    ||||||||||||||||||| |||||||| ||||| | | ||||||||| |||||| ||  |  | ||||| ||||||||||||| ||||    
T  18212611 gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatgcattagtttgattatgattaattgtgtattttct 18212523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 1527 - 1584
Alignment:
Q  64 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 121  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  1527 ttgaatgaaattgatgtatgagcataattttaattaattgtgtatgttctggattgtt 1584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 1659 - 1716
Alignment:
Q  130 cggagtagtaagtcatatgaaat-atatgtgtagttaagttgtatgtagatatacaca 186  Q
    |||||| |||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  1659 cggagttgtaagtcatatgaaaacatatgcattgttaagttgtatgtagatatacaca 1716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 8e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 22232436 - 22232493
Alignment:
Q  64 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 121  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  22232436 ttgaatgaaattgatgtatgagcataattataattaatcgtgtatgttctggattgtt 22232493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 23527747 - 23527632
Alignment:
Q  73 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 171  Q
    |||||||||||||||||||||||| |||||||||  || ||||||| || || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  23527747 attgatgtatgtgcataattataaataattgtgtcagt-ctggattatttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 23527650  T
Q  172 atgtagatatacacaggt 189  Q
    ||||||||||||||||||    
T  23527649 atgtagatatacacaggt 23527632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 23112492 - 23112546
Alignment:
Q  25 gagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 79  Q
    ||||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  23112492 gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 23112546  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 22232568 - 22232625
Alignment:
Q  130 cggagtagtaagtcatatgaaat-atatgtgtagttaagttgtatgtagatatacaca 186  Q
    |||||| |||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  22232568 cggagtcgtaagtcatatgaaaacatatgcattgttaagttgtatgtagatatacaca 22232625  T

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Target: scaffold0077 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 17972 - 18024
Alignment:
Q  69 tgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 121  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17972 tgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 18024  T

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Target: scaffold0077; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 23605 - 23657
Alignment:
Q  69 tgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 121  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23605 tgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 23657  T

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Target: scaffold0004 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 116110 - 116052
Alignment:
Q  21 ttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 79  Q
    |||||||||||||||||||||||||||||||| ||||| | | ||||||||| ||||||    
T  116110 ttttgagatgattgagtatgaaatcaagtgaacatatactatgttgaatgaacttgatg 116052  T

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Target: scaffold0337 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 9962 - 10053
Alignment:
Q  25 gagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgga 116  Q
    ||||||||||||||||||| |||||||| ||||| | | || |||||| |||||| ||  |  | ||||||||||||||||||| |||||||    
T  9962 gagatgattgagtatgaaaccaagtgaacatatactatgtttaatgaacttgatgcattagtttgattataattaattgtgtattttctgga 10053  T

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Target: scaffold0106 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 46685 - 46748
Alignment:
Q  124 aattttcggagtagtaagtcatatgaa-atatatgtgtagttaagttgtatgtagatatacaca 186  Q
    ||||| |||||| |||||||||||||| |||||||  | || ||||||||||||||||||||||    
T  46685 aatttgcggagttgtaagtcatatgaacatatatgcattgtcaagttgtatgtagatatacaca 46748  T

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Target: scaffold0106; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 50958 - 51021
Alignment:
Q  124 aattttcggagtagtaagtcatatgaa-atatatgtgtagttaagttgtatgtagatatacaca 186  Q
    ||||| |||||| |||||||||||||| |||||||  | || ||||||||||||||||||||||    
T  50958 aatttgcggagttgtaagtcatatgaacatatatgcattgtcaagttgtatgtagatatacaca 51021  T

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Target: scaffold0028 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 65340 - 65265
Alignment:
Q  29 tgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgt 104  Q
    ||||||||||||||| |||||||||||||| | | ||||||||| |||||| ||  | || ||||| |||||||||    
T  65340 tgattgagtatgaaaccaagtgaatatatactatgttgaatgaacttgatgcattagtatgattattattaattgt 65265  T

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Target: scaffold1427 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1427
Description:

Target: scaffold1427; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 1261 - 1207
Alignment:
Q  25 gagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 79  Q
    ||||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  1261 gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 1207  T

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Target: scaffold0139 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 15802 - 15856
Alignment:
Q  25 gagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 79  Q
    ||||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  15802 gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 15856  T

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Target: scaffold0020 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 102733 - 102787
Alignment:
Q  25 gagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 79  Q
    ||||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  102733 gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 102787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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