View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_598 (Length: 202)
Name: NF7850A_low_598
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_598 |
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| [»] chr6 (10 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 106; Significance: 3e-53; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 42 - 202
Target Start/End: Original strand, 26950170 - 26950331
Alignment:
| Q |
42 |
tatgctgtaacaatttgaatggaaa-tattataattggaccaaaatcaatatgaacgcgattttatcagtgtcattattacatatcaatacatatatgtg |
140 |
Q |
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| T |
26950170 |
tatgttgtaacaatttgaattaaaaatattataattgaacataaatcaatatgaacacgattttatcagtgtcattattatatatcaatatatatatgta |
26950269 |
T |
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| Q |
141 |
atagttattctgatgcatttatttaaatattaatgattggacagaaatgaatatgaacgcga |
202 |
Q |
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| T |
26950270 |
gtagttattctgatgcatttatttaaatatttatgattggacagaaatgaatatgaacgcga |
26950331 |
T |
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Target: chr6; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 31288791 - 31288890
Alignment:
| Q |
100 |
attttatcagtgtcattattacatatcaatacatatatgtgatagttattctgatgcatttatttaaatattaatgattggacagaaatgaatatgaacg |
199 |
Q |
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| T |
31288791 |
atttcatcagtctcattattatatgtaaatacatatttgtgatagttattctgatgcatttatttaaatatttatgattggacataaatgaatatgaacg |
31288890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 116 - 199
Target Start/End: Original strand, 26975453 - 26975536
Alignment:
| Q |
116 |
tattacatatcaatacatatatgtgatagttattctgatgcatttatttaaatattaatgattggacagaaatgaatatgaacg |
199 |
Q |
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| T |
26975453 |
tattatatatcagtacatatatgtgattgttattctgatgcatgtatttaaatatttatgattggacagaaatgaatatgaacg |
26975536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 116 - 199
Target Start/End: Original strand, 26636148 - 26636231
Alignment:
| Q |
116 |
tattacatatcaatacatatatgtgatagttattctgatgcatttatttaaatattaatgattggacagaaatgaatatgaacg |
199 |
Q |
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| T |
26636148 |
tattatatatcaatacatatacgtgattgttattctgatacatgtatttaaatattcatgattggacagaaatgaatatgaacg |
26636231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 116 - 199
Target Start/End: Original strand, 26742114 - 26742197
Alignment:
| Q |
116 |
tattacatatcaatacatatatgtgatagttattctgatgcatttatttaaatattaatgattggacagaaatgaatatgaacg |
199 |
Q |
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| T |
26742114 |
tattatatatcaatacatatacgtgattgttattctgatacatgtatttaaatattcatgattggacagaaatgaatatgaacg |
26742197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 116 - 199
Target Start/End: Original strand, 25074372 - 25074455
Alignment:
| Q |
116 |
tattacatatcaatacatatatgtgatagttattctgatgcatttatttaaatattaatgattggacagaaatgaatatgaacg |
199 |
Q |
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| T |
25074372 |
tattatatatcaagacatatatgtgattattattctaatgcatgtatttaaatatttatgattggacagaaatgaatatgaacg |
25074455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 26959634 - 26959711
Alignment:
| Q |
122 |
atatcaatacatatatgtgatagttattctgatgcatttatttaaatattaatgattggacagaaatgaatatgaacg |
199 |
Q |
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| T |
26959634 |
atatcaatacatatatgtgattgttattctaatacatgtatttaaatatttatgattggacagaaatgagtatgaacg |
26959711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 116 - 199
Target Start/End: Original strand, 25074191 - 25074274
Alignment:
| Q |
116 |
tattacatatcaatacatatatgtgatagttattctgatgcatttatttaaatattaatgattggacagaaatgaatatgaacg |
199 |
Q |
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| T |
25074191 |
tattacatatcaatacatatatgtgattgctattctaatgcgtatagttaaatatctatgattggacataaatgaatatgaacg |
25074274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 122 - 197
Target Start/End: Complemental strand, 27664879 - 27664804
Alignment:
| Q |
122 |
atatcaatacatatatgtgatagttattctgatgcatttatttaaatattaatgattggacagaaatgaatatgaa |
197 |
Q |
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| T |
27664879 |
atattaatacatatgtgtgattgttattctaatacatctatttaaatatgtatgattggacagaaataaatatgaa |
27664804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 132 - 202
Target Start/End: Original strand, 24716103 - 24716173
Alignment:
| Q |
132 |
atatatgtgatagttattctgatgcatttatttaaatattaatgattggacagaaatgaatatgaacgcga |
202 |
Q |
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| T |
24716103 |
atatatgtgattgttattctgatgcacgtattataacatttatgattggacagaaatgaacatgaaggcga |
24716173 |
T |
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Target: chr2 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 17992896 - 17992812
Alignment:
| Q |
115 |
ttattacatatcaatacatatatgtgatagttattctgatgcatttatttaaatattaatgattggacagaaatgaatatgaacg |
199 |
Q |
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| T |
17992896 |
ttattacatatcaagacgtatatgtgatttttattctgatgcatgtatttaaatatttttgattggacagaaatgaatatgaacg |
17992812 |
T |
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