View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_6 (Length: 602)

Name: NF7850A_low_6
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_6
NF7850A_low_6
[»] chr4 (3 HSPs)
chr4 (61-581)||(27731622-27732142)
chr4 (17-291)||(27738612-27738887)
chr4 (241-275)||(51220042-51220076)
[»] chr3 (2 HSPs)
chr3 (61-423)||(21249569-21249929)
chr3 (443-489)||(21249473-21249519)
[»] chr1 (7 HSPs)
chr1 (109-437)||(21155078-21155407)
chr1 (17-293)||(21160511-21160779)
chr1 (443-581)||(21155455-21155590)
chr1 (165-221)||(21074349-21074405)
chr1 (169-296)||(21078992-21079119)
chr1 (241-293)||(21074290-21074342)
chr1 (96-136)||(21074459-21074499)
[»] chr6 (2 HSPs)
chr6 (443-581)||(3073644-3073778)
chr6 (92-197)||(14809296-14809402)


Alignment Details
Target: chr4 (Bit Score: 505; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 61 - 581
Target Start/End: Original strand, 27731622 - 27732142
Alignment:
Q  61 cttgaagggtgttcatgaaataacaaatgactatactcctctattgagtttacatctgtgaacacattcagaatatcaatggaaaaacaaatcatttcct 160  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27731622 cttgaagggtgttcatgaaataacaaatgactatactcctctgttgagtttacatctgtgaacacattcagaatatcaatggaaaaacaaatcattttct 27731721  T
Q  161 ttgcatagaacaatgagttaaaatgacctaaataagacgatgaaagactaattggtttcattcatgtgccacatcctctgttggaagctcattcaaatca 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27731722 ttgcatagaacaatgagttaaaatgacctaaataagacgatgaaagactaattggtttcattcatgtgccacatcctctgttggaagctcattcaaatca 27731821  T
Q  261 aaattcataacaactccttttggcttcaattcattagaactctgttccatcccagttcctccgccttcattatttttcttcttttcttcaccttggatgc 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27731822 aaattcataacaactccttttggcttcaattcattagaactctgttccatcccagttcctccgccttcattatttttcttcttttcttcaccttggatgc 27731921  T
Q  361 attgccagaccttgttgtctttaatcttgaatatcagccacaaactctttttactgttattattattattctccttcaccttgatcttgtcattatccac 460  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27731922 attgccagaccttgttgtctttaatcttgaatatcagccgcaaactctttttactgttattattattattctccttcaccttgatcttgtcattatccac 27732021  T
Q  461 gttgcttgaaactttgaactttttatgtacctgaccatgatcaccaccaccaccagccgcagcgcaagacatattgaagagtgtttgtgctccattaaga 560  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27732022 attgcttgaaactttgaactttttatgtacctgaccatgatcaccaccaccaccagccgcagcgcaagacatattgaagagtgtttgtgctccattaaga 27732121  T
Q  561 tgttcatgatcaatgatattt 581  Q
    |||||||||||||||||||||    
T  27732122 tgttcatgatcaatgatattt 27732142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 27738612 - 27738887
Alignment:
Q  17 ggacatccaactcattcaattgttttaatgga-aaagnnnnnnnncttgaagggtgttcatgaaataacaaatgactatactcctctattgagtttacat 115  Q
    |||||| ||||||||||||||| ||||||||| |||         |||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  27738612 ggacattcaactcattcaattgctttaatggagaaataaataaaacttgaagggtgttcatgaaataacaaataactatactcctctattgagtttccat 27738711  T
Q  116 ctgtgaacacattcagaatatcaatggaaaaacaaatcatttcctttgcatagaacaatgagttaaaatgacctaaataagacgatgaaagactaattgg 215  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||    
T  27738712 ctgtgaacacattcagaatatcaatggaaaaacaaatcattacatttgcatagaacaatgagttcaaatgacctaaataagacaatgaaagaccaattgg 27738811  T
Q  216 tttcattcatgtgccacatcctctgttggaagctcattcaaatcaaaattcataacaactccttttggcttcaatt 291  Q
    |||||||||||||  ||||| ||| |||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  27738812 tttcattcatgtgaaacatcttctattggaagcgcattcaaatcaaaattcataacaactcctttttgcttcaatt 27738887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 275
Target Start/End: Original strand, 51220042 - 51220076
Alignment:
Q  241 ttggaagctcattcaaatcaaaattcataacaact 275  Q
    |||||||||||||| ||||||||||||||||||||    
T  51220042 ttggaagctcattcgaatcaaaattcataacaact 51220076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 61 - 423
Target Start/End: Complemental strand, 21249929 - 21249569
Alignment:
Q  61 cttgaagggtgttcatgaaataacaaatgactatactcctctattgagtttacatctgtgaacacattcagaatatcaatggaaaaacaaatcatttcct 160  Q
    |||||| ||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  21249929 cttgaaaggtgttcatgaaataacaaataactatactcctctattaagtttacatttgtgaacacattcaggatatcaatggaaaaacaaatcatttcct 21249830  T
Q  161 ttgcatagaacaatgagttaaaatgacctaaataagacgatgaaagactaattggtttcattcatgtgccacatcctctgttggaagctcattcaaatca 260  Q
    || || |||||||| |||| ||||||||||||||| || |||||| || |||||||||||||||||||| ||||| |||||| |||||||||||||||||    
T  21249829 ttacaaagaacaattagttcaaatgacctaaataatacaatgaaaaaccaattggtttcattcatgtgcaacatcttctgtttgaagctcattcaaatca 21249730  T
Q  261 aaattcataacaactccttttggcttcaattcattagaactctgttccatcccagttcctccgccttcattatttttcttcttttcttcaccttggatgc 360  Q
    ||||||||||||||||||||| | |||||||||||| ||||||||||||||||| || | || ||||||||||||||||||||||||||| ||||| |||    
T  21249729 aaattcataacaactcctttt-gattcaattcattaaaactctgttccatcccattttcgccaccttcattatttttcttcttttcttcatcttggctgc 21249631  T
Q  361 attgccagaccttgttgtctttaatcttgaatatcagccacaaactctttttactgttattat 423  Q
    ||||||||||||||||||||||||||||| ||| ||    |||||||||||||||||||||||    
T  21249630 attgccagaccttgttgtctttaatcttggatagca-tagcaaactctttttactgttattat 21249569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 489
Target Start/End: Complemental strand, 21249519 - 21249473
Alignment:
Q  443 gatcttgtcattatccacgttgcttgaaactttgaactttttatgta 489  Q
    |||||| ||||||||||| ||||||||| |||||| |||||||||||    
T  21249519 gatcttttcattatccacattgcttgaagctttgagctttttatgta 21249473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 109 - 437
Target Start/End: Original strand, 21155078 - 21155407
Alignment:
Q  109 tttacatctgtgaacacattcagaatatcaatggaaaaacaaatcatttcctttgcatagaacaatgagttaaaatgacctaaataagacgatgaaagac 208  Q
    |||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| ||||| |||    
T  21155078 tttacatctgtgaacatattccgaatataaatggaaaaacaaatcatttcctttgcataaaccaatgagtttaaatgacctaaataagacaatgaa-gac 21155176  T
Q  209 taattggtttcattcatgtgccacatcctctgttggaagctcattcaaatcaaaattcataacaactccttttggcttcaattcattagaactctgttcc 308  Q
     |||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21155177 caattggtttcattcatgtgcaacatcttcagttggaagctcattcaaatcaaaattcataacaactccttttggcttcaattcattagaactatgttcc 21155276  T
Q  309 atcccagtt--cctccgccttcattatttttcttcttttcttcaccttggatgcattgccagaccttgttgtctttaatcttgaatatcagccacaaact 406  Q
     |||| |||   | || ||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||| ||| | |||||||    
T  21155277 ctccctgtttcacaccaccttcgttatttttcttcttttcttcaccttggatgcattgcacgaccttgttgtctttaaccttgaatctcaacaacaaact 21155376  T
Q  407 ctttttactgttattattattattctccttc 437  Q
    |||||||| |||||||| |||||| ||||||    
T  21155377 ctttttacggttattatcattattatccttc 21155407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 21160511 - 21160779
Alignment:
Q  17 ggacatccaactcattcaattgttttaatgga---aaagnnnnnnnncttgaagggtgttcatgaaataacaaatgactatactcctctattgagtttac 113  Q
    |||||||||||||||||||||| |||||||||   |||         ||||||| |||||||||||||||||||| || |||||| ||||||||||||||    
T  21160511 ggacatccaactcattcaattgctttaatggagaaaaataaataaaacttgaagagtgttcatgaaataacaaataaccatactcatctattgagtttac 21160610  T
Q  114 atctgtgaacacattcagaatatcaatggaaaaacaaatcatttcctttgcatagaacaatgagttaaaatgacctaaataagacgatgaaagactaatt 213  Q
    ||||| ||||||||||||| ||           ||||||||||||||||||||| ||||||||||| |||||||||||  ||||| ||||||||| ||||    
T  21160611 atctgcgaacacattcagacta-----------acaaatcatttcctttgcataaaacaatgagttcaaatgacctaaccaagacaatgaaagaccaatt 21160699  T
Q  214 ggtttcattcatgtgccacatcctctgttggaagctcattcaaatcaaaattcataacaactccttttggcttcaattca 293  Q
    ||||| |||||| ||  ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21160700 ggttttattcatctgaaacatcttctgttggaaactcattcaaatcaaaattcataacaactccttttggcttcaattca 21160779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 443 - 581
Target Start/End: Original strand, 21155455 - 21155590
Alignment:
Q  443 gatcttgtcattatccacgttgcttgaaactttgaactttttatgtacctgaccatgatcaccaccaccaccagccgcagcgcaagacatattgaagagt 542  Q
    |||||||||||||||||| ||||||||| |||||| ||||| |||||  ||||||||||||||||||| | |||| |||   ||||| |||| |||||||    
T  21155455 gatcttgtcattatccacattgcttgaagctttgagcttttcatgtagatgaccatgatcaccaccacgagcagcagca---caagagatatggaagagt 21155551  T
Q  543 gtttgtgctccattaagatgttcatgatcaatgatattt 581  Q
    || |||||||||||||  |||||||||||||||||||||    
T  21155552 gtatgtgctccattaatttgttcatgatcaatgatattt 21155590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 21074405 - 21074349
Alignment:
Q  165 atagaacaatgagttaaaatgacctaaataagacgatgaaagactaattggtttcat 221  Q
    ||||||||||||||| |||| ||||||||||||  ||||||||||||||||||||||    
T  21074405 atagaacaatgagttcaaatcacctaaataagaaaatgaaagactaattggtttcat 21074349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 296
Target Start/End: Complemental strand, 21079119 - 21078992
Alignment:
Q  169 aacaatgagttaaaatgacctaaataagacgatgaaagactaattggtttcattcatgtgccacatcctctgttggaagctcattcaaatcaaaattcat 268  Q
    ||||||||||| |||| |||||||| |||  ||||||||| | |||    ||||||| ||| ||| | | |||||||||||| ||||||||||||||| |    
T  21079119 aacaatgagttcaaatcacctaaattagaaaatgaaagaccagttgaacacattcatctgcaacaccatttgttggaagctcgttcaaatcaaaattcct 21079020  T
Q  269 aacaactccttttggcttcaattcatta 296  Q
    |||||||  || || |||||||||||||    
T  21079019 aacaactttttctgacttcaattcatta 21078992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 21074342 - 21074290
Alignment:
Q  241 ttggaagctcattcaaatcaaaattcataacaactccttttggcttcaattca 293  Q
    |||||| |||||||||||||||||||||||||||||  | || ||||||||||    
T  21074342 ttggaatctcattcaaatcaaaattcataacaactctatctgccttcaattca 21074290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 21074499 - 21074459
Alignment:
Q  96 ctcctctattgagtttacatctgtgaacacattcagaatat 136  Q
    |||||| ||||||||||||| |||||||| |||||||||||    
T  21074499 ctcctccattgagtttacatttgtgaacagattcagaatat 21074459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 443 - 581
Target Start/End: Original strand, 3073644 - 3073778
Alignment:
Q  443 gatcttgtcattatccacgttgcttgaaactttgaactttttatgtacctgaccatgatcaccaccaccaccagccgcagcgcaagacatattgaagagt 542  Q
    ||||||||||||||||||  |  ||||| ||||||||||||||||||  |||||||||||| |||||| ||     |  | ||||||||||| |||||||    
T  3073644 gatcttgtcattatccacaattgttgaagctttgaactttttatgtaggtgaccatgatcagcaccacgaca----gttgtgcaagacatatcgaagagt 3073739  T
Q  543 gtttgtgctccattaagatgttcatgatcaatgatattt 581  Q
    || | ||||||||||||||||||||||||||||||||||    
T  3073740 gtatatgctccattaagatgttcatgatcaatgatattt 3073778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 92 - 197
Target Start/End: Complemental strand, 14809402 - 14809296
Alignment:
Q  92 tatactcctctattgagtttacatctgtgaacacattcagaatatcaatgg-aaaaacaaatcatttcctttgcatagaacaatgagttaaaatgaccta 190  Q
    |||| |||| |||||||||||||| |||| |||||||||||||||| |||| |||||| ||||||||||||| ||||||||||||| || |||| |||||    
T  14809402 tatattcctttattgagtttacatttgtgtacacattcagaatatcgatggaaaaaaccaatcatttcctttccatagaacaatgacttcaaatcaccta 14809303  T
Q  191 aataaga 197  Q
     ||||||    
T  14809302 gataaga 14809296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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