View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_60 (Length: 404)
Name: NF7850A_low_60
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 9 - 398
Target Start/End: Complemental strand, 51964816 - 51964427
Alignment:
| Q |
9 |
gatatgaatggggtttaaagtcgaggttgtaggctgttgataaatacaaaggccaactgattgtaagattgaaagcgtttcatggtccgtctcaatcagc |
108 |
Q |
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| T |
51964816 |
gatatgaatggggtttaaagtcgaggttgtaggctgttgataaatacaaaggccaactgattgtaagattgaaagcgtttcatggtccgtctcaatcagc |
51964717 |
T |
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| Q |
109 |
aagcttagcttcctctgtttgacaacaaattttcagctactttgtgcaaaataaataagagaggggggaaatttaattaaggtagtttgcatcaaaacag |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51964716 |
aagcttagcttcctctgtttgacaacaaattttcagctactttgtgcaaaataaataagagagaggggaaatttaattaaggtagtttgcatcaaaacag |
51964617 |
T |
|
| Q |
209 |
gatcttaagtagagagcacagttgtggagcccaataagtgtctcagttgtctaatccatcaccatctaggcatttgtgattcttggcagaccttgtgttc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
51964616 |
gatcttaagtagagagcacagttgtggagcccaataagtgtcccagttgtctaatccatcactatctaggcctttgtgattcttggcagaccttgtgttc |
51964517 |
T |
|
| Q |
309 |
ttttggttttacttagctagataccacatannnnnnnnnnnnnnnnnnnccggtcaagacacgattgagtgggggcatgcttattattat |
398 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
51964516 |
ttttggttttacttagctagctaccacataaacaacaacaacaacaacaccggtcaagacacgattgagtgggggcatgcttattattat |
51964427 |
T |
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