View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_61 (Length: 401)
Name: NF7850A_low_61
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_61 |
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| [»] scaffold0157 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 7 - 385
Target Start/End: Complemental strand, 7734004 - 7733625
Alignment:
| Q |
7 |
gaaaatttatacgcattgacacaataaaaagagcggaaagatagatactcaggtgtccgtctttccgcttgtattgtttnnnnnnn-ttataatatttta |
105 |
Q |
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| T |
7734004 |
gaaaatttatacgcattgacgcaataaaaagagcagaaagatggatattcaggtgtccgtctttccgcttgtattgtttaaaaaaaattataatatgtta |
7733905 |
T |
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| Q |
106 |
taaacacaaagttaataaccaaaaactaaattatatcctctccaaaataaaactaagatggatactcaagtcaatatgaagacaaagagtgtgaggtatt |
205 |
Q |
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| T |
7733904 |
taaacacaaagttaataaccaaaaactaaattacatccgctccaaaataaaactaagatggatactcaagtcaatatgaaaacaaagagtgtgaggcatt |
7733805 |
T |
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| Q |
206 |
gaaataatagaaatggtgtacattgcttttgtaatgaatgatgcctttctaggcgttggtaagaattcgtctggaagttagtgagggtctgtctcgatcg |
305 |
Q |
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| T |
7733804 |
gaaataatagaaatggtgtacattgcttttgtaatgaatgaggcctttctaggcattggtaagaagtcgtctggaagttagtgaaggtctgtttcgatcg |
7733705 |
T |
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| Q |
306 |
atgattcttcaatattgggctcaagtgatcgatgaagaatgaaatctatggtttagtcattgaggtgttgtacatgatgt |
385 |
Q |
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| T |
7733704 |
atgattcttcaatattgggctcaagtgatcgatgaagaatgaaatctatggtttagtcattgaagcgttgtacatgatgt |
7733625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 370 - 408
Alignment:
| Q |
10 |
aatttatacgcattgacacaataaaaagagcggaaagat |
48 |
Q |
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| T |
370 |
aatttatacgcattaacacaataaaaagagcggacagat |
408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 12520547 - 12520509
Alignment:
| Q |
10 |
aatttatacgcattgacacaataaaaagagcggaaagat |
48 |
Q |
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| T |
12520547 |
aatttatacgcattaacacaataaaaagagcggacagat |
12520509 |
T |
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