View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_63 (Length: 400)

Name: NF7850A_low_63
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_63
NF7850A_low_63
[»] chr4 (10 HSPs)
chr4 (5-390)||(30836827-30837213)
chr4 (103-212)||(3522376-3522485)
chr4 (331-377)||(32538350-32538396)
chr4 (332-377)||(53535991-53536036)
chr4 (336-378)||(1736121-1736163)
chr4 (336-378)||(40240403-40240445)
chr4 (336-378)||(40240740-40240782)
chr4 (336-377)||(12375987-12376028)
chr4 (336-377)||(36480570-36480611)
chr4 (337-377)||(35631165-35631205)
[»] chr3 (13 HSPs)
chr3 (5-265)||(3349691-3349950)
chr3 (328-384)||(33304985-33305041)
chr3 (328-377)||(1388122-1388171)
chr3 (328-390)||(54203487-54203549)
chr3 (336-375)||(5136587-5136626)
chr3 (328-375)||(44687476-44687523)
chr3 (328-374)||(3350038-3350084)
chr3 (337-375)||(13742750-13742788)
chr3 (332-377)||(42148294-42148339)
chr3 (337-375)||(5138301-5138339)
chr3 (331-369)||(44685870-44685908)
chr3 (336-377)||(40798994-40799035)
chr3 (332-377)||(52514290-52514335)
[»] chr2 (16 HSPs)
chr2 (8-265)||(43977800-43978056)
chr2 (79-265)||(17912262-17912448)
chr2 (5-86)||(17912801-17912881)
chr2 (328-383)||(43978143-43978198)
chr2 (328-374)||(17688288-17688334)
chr2 (328-384)||(28138310-28138366)
chr2 (332-377)||(2528671-2528716)
chr2 (337-374)||(39378348-39378385)
chr2 (331-383)||(17688786-17688838)
chr2 (328-376)||(17913027-17913075)
chr2 (336-382)||(16340577-16340623)
chr2 (331-377)||(33667766-33667812)
chr2 (336-377)||(12252121-12252162)
chr2 (337-390)||(38779674-38779726)
chr2 (331-383)||(43977586-43977639)
chr2 (337-377)||(39033552-39033592)
[»] chr7 (16 HSPs)
chr7 (5-265)||(35200373-35200632)
chr7 (9-265)||(4997513-4997767)
chr7 (332-383)||(40323660-40323711)
chr7 (331-382)||(31873395-31873446)
chr7 (331-377)||(31873849-31873895)
chr7 (330-383)||(36185583-36185636)
chr7 (336-372)||(19804630-19804666)
chr7 (328-371)||(4997852-4997895)
chr7 (345-383)||(36185182-36185220)
chr7 (328-383)||(35200785-35200841)
chr7 (330-377)||(30468452-30468499)
chr7 (332-377)||(18219985-18220030)
chr7 (336-377)||(29097890-29097931)
chr7 (336-377)||(48901472-48901513)
chr7 (331-390)||(4997341-4997401)
chr7 (337-377)||(47750526-47750566)
[»] chr1 (23 HSPs)
chr1 (328-375)||(52427518-52427565)
chr1 (328-383)||(253302-253357)
chr1 (328-383)||(32160725-32160780)
chr1 (336-383)||(32161325-32161372)
chr1 (328-383)||(33206028-33206083)
chr1 (328-383)||(20114598-20114653)
chr1 (339-390)||(21263355-21263406)
chr1 (328-377)||(26944478-26944527)
chr1 (330-383)||(46320480-46320533)
chr1 (337-377)||(15660260-15660300)
chr1 (328-372)||(15659871-15659915)
chr1 (332-376)||(28456453-28456497)
chr1 (337-377)||(33205483-33205523)
chr1 (331-374)||(7820132-7820175)
chr1 (331-374)||(15354184-15354227)
chr1 (332-375)||(49875008-49875051)
chr1 (332-375)||(49875365-49875408)
chr1 (336-378)||(9618719-9618761)
chr1 (336-390)||(26945247-26945301)
chr1 (336-377)||(6328897-6328938)
chr1 (332-377)||(28456747-28456792)
chr1 (336-377)||(51461883-51461924)
chr1 (337-377)||(26607466-26607506)
[»] chr8 (14 HSPs)
chr8 (328-376)||(27704555-27704603)
chr8 (328-383)||(7577613-7577668)
chr8 (328-383)||(27704054-27704109)
chr8 (328-375)||(7577117-7577164)
chr8 (328-375)||(37577755-37577802)
chr8 (332-375)||(43519906-43519949)
chr8 (336-377)||(3695369-3695410)
chr8 (336-377)||(22960648-22960689)
chr8 (336-377)||(30026264-30026305)
chr8 (336-377)||(34503092-34503133)
chr8 (336-377)||(36345005-36345046)
chr8 (336-377)||(38133172-38133213)
chr8 (332-377)||(44886826-44886871)
chr8 (337-377)||(23508596-23508636)
[»] chr5 (7 HSPs)
chr5 (337-377)||(35777049-35777089)
chr5 (328-372)||(2532526-2532570)
chr5 (328-390)||(9070418-9070480)
chr5 (331-374)||(2532088-2532131)
chr5 (332-377)||(8680272-8680317)
chr5 (328-377)||(29413301-29413350)
chr5 (328-372)||(18848037-18848081)
[»] scaffold0153 (2 HSPs)
scaffold0153 (328-383)||(16886-16941)
scaffold0153 (328-377)||(17388-17437)
[»] chr6 (5 HSPs)
chr6 (328-383)||(11687917-11687972)
chr6 (337-383)||(11687452-11687498)
chr6 (337-377)||(117260-117300)
chr6 (337-377)||(13164291-13164331)
chr6 (328-376)||(25987138-25987186)
[»] scaffold0283 (1 HSPs)
scaffold0283 (332-377)||(530-575)


Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 5 - 390
Target Start/End: Original strand, 30836827 - 30837213
Alignment:
Q  5 cacagtctatgtgattagctgtgaatgaagaataatacaaagtgcacatagaaaattacaccctctgtcctaattaaaatatcaagtgtttcagcatttt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30836827 cacagtctatgtgattagctgtgaatgaagaataatacaaagtgcacatagaaaattacaccctctgtcctaattaaaatatcaagtgtttcagcatttt 30836926  T
Q  105 taaatctgccaaacctgttccatacaacccatactatttattagctgagcaataaatttgaaggcaacgtaataacgaagttattttaacatgtcatttc 204  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30836927 tatatctgccaaacctgttccatacaacccatactatttattagctgagcaataaatttgaaggcaacgtagtaacgaagttattttaacatgtcatttc 30837026  T
Q  205 ttggctaatcaatcatattgtccatagttcaatagagttattttaacatgctgtttggttt-nnnnnnnntttgatgagttagttcttcggaggnnnnnn 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||          
T  30837027 ttggctaatcaatcatattgtccatagttcaatagagttattttaacatgctgtttggtttaaaaaaaaaattgatgagttagttcttcggaggtttttt 30837126  T
Q  304 nnctttacttttccatcggctgttaacttcgatagttaactgcagccggttccaaacttcggtagttaactgccacagggatatttt 390  Q
      |||| ||||||||||||| |||||||||||||||||| |||| |||||||||||||||  ||||||||||| |||||||||||||    
T  30837127 ttctttccttttccatcggcagttaacttcgatagttaattgcaaccggttccaaacttcaatagttaactgctacagggatatttt 30837213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 103 - 212
Target Start/End: Original strand, 3522376 - 3522485
Alignment:
Q  103 tttaaatctgccaaacctgttccatacaacccatactatttattagctgagcaataaatttgaaggcaacgtaataacgaagttattttaacatgtcatt 202  Q
    |||| ||||| |||||||| |||||||   ||||| ||||| |||| ||| |||||||||||||| |||| |||||||| |||||||| |||||||||||    
T  3522376 tttatatctgacaaacctgctccatacgtaccatattatttgttagttgatcaataaatttgaagccaacttaataacgtagttatttgaacatgtcatt 3522475  T
Q  203 tcttggctaa 212  Q
    ||||||||||    
T  3522476 tcttggctaa 3522485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 331 - 377
Target Start/End: Original strand, 32538350 - 32538396
Alignment:
Q  331 ttcgatagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    ||||||||||||||||||||||||||| | ||||| |||||||||||    
T  32538350 ttcgatagttaactgcagccggttccataattcggcagttaactgcc 32538396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 53536036 - 53535991
Alignment:
Q  332 tcgatagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||||||||| | ||||| |||||||||||    
T  53536036 tcgatagttaactgcagccggttccataattcggcagttaactgcc 53535991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 378
Target Start/End: Original strand, 1736121 - 1736163
Alignment:
Q  336 tagttaactgcagccggttccaaacttcggtagttaactgcca 378  Q
    |||||||||||||||||||||| | ||||| ||||||||||||    
T  1736121 tagttaactgcagccggttccataattcggcagttaactgcca 1736163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 378
Target Start/End: Original strand, 40240403 - 40240445
Alignment:
Q  336 tagttaactgcagccggttccaaacttcggtagttaactgcca 378  Q
    |||||||||||||||||||||| | ||||| ||||||||||||    
T  40240403 tagttaactgcagccggttccacaattcggcagttaactgcca 40240445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 378
Target Start/End: Original strand, 40240740 - 40240782
Alignment:
Q  336 tagttaactgcagccggttccaaacttcggtagttaactgcca 378  Q
    |||||||||||||||||||||| | ||||| ||||||||||||    
T  40240740 tagttaactgcagccggttccataattcggcagttaactgcca 40240782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 377
Target Start/End: Complemental strand, 12376028 - 12375987
Alignment:
Q  336 tagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||||| | ||||| |||||||||||    
T  12376028 tagttaactgcagccggttccataattcggcagttaactgcc 12375987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 377
Target Start/End: Original strand, 36480570 - 36480611
Alignment:
Q  336 tagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||||| | ||||| |||||||||||    
T  36480570 tagttaactgcagccggttccataattcggcagttaactgcc 36480611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 35631205 - 35631165
Alignment:
Q  337 agttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    ||||||||||||||||||||| | ||||| |||||||||||    
T  35631205 agttaactgcagccggttccataattcggcagttaactgcc 35631165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 265
Target Start/End: Original strand, 3349691 - 3349950
Alignment:
Q  5 cacagtctatgtgattagctgtgaatgaagaataatacaaagtgcacatagaaaattacaccctctgtcctaattaaaatatcaagtgtttcagcatttt 104  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  3349691 cacagtctatgtgattagctgtgaatgt-gaataatacaaagtgcacatagaaaattacaccctttgtcctaattaaaatatcaattgtttcagcatttt 3349789  T
Q  105 taaatctgccaaacctgttccatacaacccatactatttattagctgagcaataaatttgaaggcaacgtaataacgaagttattttaacatgtcatttc 204  Q
    || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| |||||||||    
T  3349790 tatatctgccaaaccagttccatacaacccatactatttattagctgagcaataaatttgaaggcaacgcagtaacgaagtaattttaacctgtcatttc 3349889  T
Q  205 ttggctaatcaatcatattgtccatagttcaatagagttattttaacatgctgtttggttt 265  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3349890 ttggctaatcaatcatattgtccatagttcaatacagttattttaacatgctgtttggttt 3349950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 33304985 - 33305041
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaactgccacaggga 384  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||    
T  33304985 aacttcggttgttaactgcagccggttccaaacttcggtagttaactgccgcaggga 33305041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 1388122 - 1388171
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  1388122 aacttcggtagttaactgcagccgattccaaacttcggtagttaactgcc 1388171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 328 - 390
Target Start/End: Complemental strand, 54203549 - 54203487
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaactgccacagggatatttt 390  Q
    |||||||  |||||||||||||||||||||||||| ||||||||| |||| |||||| |||||    
T  54203549 aacttcgggagttaactgcagccggttccaaactttggtagttaattgccgcagggacatttt 54203487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 375
Target Start/End: Complemental strand, 5136626 - 5136587
Alignment:
Q  336 tagttaactgcagccggttccaaacttcggtagttaactg 375  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  5136626 tagttaactgcagccggttccaaatttcggtagttaactg 5136587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 375
Target Start/End: Original strand, 44687476 - 44687523
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaactg 375  Q
    |||||| |||||||||||||||| |||| |||||||||||||||||||    
T  44687476 aacttcaatagttaactgcagccagttctaaacttcggtagttaactg 44687523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 328 - 374
Target Start/End: Original strand, 3350038 - 3350084
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaact 374  Q
    ||||||| |||||||||||||||| || |||||||||||||||||||    
T  3350038 aacttcggtagttaactgcagccgatttcaaacttcggtagttaact 3350084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 337 - 375
Target Start/End: Complemental strand, 13742788 - 13742750
Alignment:
Q  337 agttaactgcagccggttccaaacttcggtagttaactg 375  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  13742788 agttaactgcagccggtttcaaacttcggtagttaactg 13742750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 42148339 - 42148294
Alignment:
Q  332 tcgatagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||||||||| | ||||| |||||||||||    
T  42148339 tcgatagttaactgcagccggttccataattcggcagttaactgcc 42148294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 375
Target Start/End: Original strand, 5138301 - 5138339
Alignment:
Q  337 agttaactgcagccggttccaaacttcggtagttaactg 375  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  5138301 agttaactgtagctggttccaaacttcggtagttaactg 5138339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 369
Target Start/End: Complemental strand, 44685908 - 44685870
Alignment:
Q  331 ttcgatagttaactgcagccggttccaaacttcggtagt 369  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  44685908 ttcggtagttaactgcagccggtttcaaacttcggtagt 44685870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 377
Target Start/End: Original strand, 40798994 - 40799035
Alignment:
Q  336 tagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||||| | ||||| |||||||||||    
T  40798994 tagttaactgcagccggttccataattcggcagttaactgcc 40799035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 52514335 - 52514290
Alignment:
Q  332 tcgatagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||||||||| | ||||| |||||| ||||    
T  52514335 tcgatagttaactgcagccggttccataattcggcagttaattgcc 52514290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 265
Target Start/End: Original strand, 43977800 - 43978056
Alignment:
Q  8 agtctatgtgattagctgtgaatgaagaataatacaaagtgcacatagaaaattacaccctctgtcctaattaaaatatcaagtgtttcagcatttttaa 107  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||     
T  43977800 agtctatgtgattagctgtgaatgt-gaataatacaaagtgcacatagaaaattacaccctttgtcctaattaaaatatcaattgtttcagcatttttat 43977898  T
Q  108 atctgccaaacctgttccatacaacccatactatttattagctgagcaataaatttgaaggcaacgtaataacgaagttattttaacatgtcatttcttg 207  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| ||||||||||||    
T  43977899 atctgccaaaccagttccatacaacccatactatttattagctgagcaataaatttgaaggcaacgcagtaacgaagtaattttaacctgtcatttcttg 43977998  T
Q  208 gctaatcaatcatattgtccatagttcaatagagttattttaacatgctgtttggttt 265  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43977999 gctaatcaatcatattgtccatagttcaatacagttattttaacatgctgtttggttt 43978056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 79 - 265
Target Start/End: Complemental strand, 17912448 - 17912262
Alignment:
Q  79 taaaatatcaagtgtttcagcatttttaaatctgccaaacctgttccatacaacccatactatttattagctgagcaataaatttgaaggcaacgtaata 178  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||    
T  17912448 taaaatatcaattgtttcagcatttttatatctgccaaacctgttccatacaacccatactattgattagccgagcaataaatttgaaggcaacgtagta 17912349  T
Q  179 acgaagttattttaacatgtcatttcttggctaatcaatcatattgtccatagttcaatagagttattttaacatgctgtttggttt 265  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17912348 acgaagttattttaacatgtcatttctcggctaatcaatcatattgtccatagttcaatagagttattttaacatgctgtttggttt 17912262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 17912881 - 17912801
Alignment:
Q  5 cacagtctatgtgattagctgtgaatgaagaataatacaaagtgcacatagaaaattacaccctctgtcctaattaaaatat 86  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||| | | ||| |||||||||||    
T  17912881 cacagtctatgtgattaactgtgaatga-gaataatacaaagtgcagatagaaaattacaccgtttatccaaattaaaatat 17912801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 383
Target Start/End: Original strand, 43978143 - 43978198
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaactgccacaggg 383  Q
    |||||||||||||||||||||||| || ||||||||||||||||||| || |||||    
T  43978143 aacttcgatagttaactgcagccgatttcaaacttcggtagttaactaccgcaggg 43978198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 328 - 374
Target Start/End: Complemental strand, 17688334 - 17688288
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaact 374  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||    
T  17688334 aacttcggtagttaactgcagccggttccaaacttcagtagttaact 17688288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 28138310 - 28138366
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaactgccacaggga 384  Q
    |||||||  |||||||||||||||||||||||| |||||||||||||| | ||||||    
T  28138310 aacttcgggagttaactgcagccggttccaaacatcggtagttaactgtcgcaggga 28138366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 2528716 - 2528671
Alignment:
Q  332 tcgatagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||||||||| | ||||| |||||||||||    
T  2528716 tcgatagttaactgcagccggttccataattcggcagttaactgcc 2528671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 374
Target Start/End: Original strand, 39378348 - 39378385
Alignment:
Q  337 agttaactgcagccggttccaaacttcggtagttaact 374  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  39378348 agttaactgcagccgattccaaacttcggtagttaact 39378385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 383
Target Start/End: Original strand, 17688786 - 17688838
Alignment:
Q  331 ttcgatagttaactgcagccggttccaaacttcggtagttaactgccacaggg 383  Q
    |||| ||||||||||| ||| ||||||||||||||||||||||| || |||||    
T  17688786 ttcggtagttaactgccgccagttccaaacttcggtagttaactaccgcaggg 17688838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 17913027 - 17913075
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaactgc 376  Q
    |||||||||| ||||||||||||| ||  ||||||||||||||||||||    
T  17913027 aacttcgataattaactgcagccgattttaaacttcggtagttaactgc 17913075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 16340577 - 16340623
Alignment:
Q  336 tagttaactgcagccggttccaaacttcggtagttaactgccacagg 382  Q
    |||||||||||| ||||||||  ||||||||||||||||||| ||||    
T  16340577 tagttaactgcaaccggttccttacttcggtagttaactgccgcagg 16340623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 377
Target Start/End: Complemental strand, 33667812 - 33667766
Alignment:
Q  331 ttcgatagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||||||||   | |||||||||||||||||    
T  33667812 ttcgatagttaactgcagccggttcattatttcggtagttaactgcc 33667766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 377
Target Start/End: Complemental strand, 12252162 - 12252121
Alignment:
Q  336 tagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||||| | ||||| |||||||||||    
T  12252162 tagttaactgcagccggttccataattcggcagttaactgcc 12252121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 38779674 - 38779726
Alignment:
Q  337 agttaactgcagccggttccaaacttcggtagttaactgccacagggatatttt 390  Q
    ||||||||||||||||||||| | ||||| |||||||||||  |||||||||||    
T  38779674 agttaactgcagccggttccataattcggcagttaactgcc-gagggatatttt 38779726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 383
Target Start/End: Complemental strand, 43977639 - 43977586
Alignment:
Q  331 ttcgatagttaactgcagccgg-ttccaaacttcggtagttaactgccacaggg 383  Q
    |||| ||||||||||||||||| ||| ||||||||||||||| ||||| |||||    
T  43977639 ttcggtagttaactgcagccggtttcaaaacttcggtagttagctgccgcaggg 43977586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 377
Target Start/End: Original strand, 39033552 - 39033592
Alignment:
Q  337 agttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||| || | |||||||||||||||||    
T  39033552 agttaactgcagccggtttcataattcggtagttaactgcc 39033592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 265
Target Start/End: Complemental strand, 35200632 - 35200373
Alignment:
Q  5 cacagtctatgtgattagctgtgaatgaagaataatacaaagtgcacatagaaaattacaccctctgtcctaattaaaatatcaagtgtttcagcatttt 104  Q
    |||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  35200632 cacagtctatgtgattagctgtgaatgt-gaataatacaaaatgcacatagaaaattacaccctttgtcctaattaaaatatcaattgtttcagcatttt 35200534  T
Q  105 taaatctgccaaacctgttccatacaacccatactatttattagctgagcaataaatttgaaggcaacgtaataacgaagttattttaacatgtcatttc 204  Q
    || ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| |||||||||    
T  35200533 tatatctgccaaaccaattccatacaacccatactatttattagctgagcaataaatttgaaggcaacgcagtaacgaagtaattttaacctgtcatttc 35200434  T
Q  205 ttggctaatcaatcatattgtccatagttcaatagagttattttaacatgctgtttggttt 265  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35200433 ttggctaatcaatcatattgtccatagttcaatacagttattttaacatgctgtttggttt 35200373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 9 - 265
Target Start/End: Original strand, 4997513 - 4997767
Alignment:
Q  9 gtctatgtgattagctgtgaatgaagaataatacaaagtgcacatagaaaattacaccctctgtcctaattaaaatatcaagtgtttcagcatttttaaa 108  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||| |    
T  4997513 gtctatgtgattagctgtgaatgt-gaataatacaaagtgcacatagaaaattacacctt-tgtcctaattaaaatatcaattgtttcagcatttttata 4997610  T
Q  109 tctgccaaacctgttccatacaacccatactatttattagctgagcaataaatttgaaggcaacgtaataacgaagttattttaacatgtcatttcttgg 208  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| |||||||||||||    
T  4997611 tctgccaaaccagttccatacaacccatactatttattagctgagcaataaatttgaaggcaacgcagtaacgaagtaattttaacctgtcatttcttgg 4997710  T
Q  209 ctaatcaatcatattgtccatagttcaatagagttattttaacatgctgtttggttt 265  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4997711 ctaatcaatcatattgtccatagttcaatacagttattttaacatgctgtttggttt 4997767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 332 - 383
Target Start/End: Original strand, 40323660 - 40323711
Alignment:
Q  332 tcgatagttaactgcagccggttccaaacttcggtagttaactgccacaggg 383  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  40323660 tcgacagttaactgcagccggttccaaacttcggtagttaactgccgcaggg 40323711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 382
Target Start/End: Complemental strand, 31873446 - 31873395
Alignment:
Q  331 ttcgatagttaactgcagccggttccaaacttcggtagttaactgccacagg 382  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  31873446 ttcgatagttaactgcagtcggttctaaacttcggtagttaactgccgcagg 31873395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 331 - 377
Target Start/End: Original strand, 31873849 - 31873895
Alignment:
Q  331 ttcgatagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  31873849 ttcggtagttaactgcagccggttccaaacatcggtagttaactgcc 31873895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 383
Target Start/End: Original strand, 36185583 - 36185636
Alignment:
Q  330 cttcgatagttaactgcagccggttccaaacttcggtagttaactgccacaggg 383  Q
    ||||| |||||||||||||||||||||||| ||||||||| ||||||| |||||    
T  36185583 cttcggtagttaactgcagccggttccaaatttcggtagtgaactgccgcaggg 36185636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 19804630 - 19804666
Alignment:
Q  336 tagttaactgcagccggttccaaacttcggtagttaa 372  Q
    |||||||||||||||||||||||||||||||||||||    
T  19804630 tagttaactgcagccggttccaaacttcggtagttaa 19804666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 371
Target Start/End: Original strand, 4997852 - 4997895
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagtta 371  Q
    |||||||||||||||||||||||| || ||||||||||||||||    
T  4997852 aacttcgatagttaactgcagccgatttcaaacttcggtagtta 4997895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 345 - 383
Target Start/End: Complemental strand, 36185220 - 36185182
Alignment:
Q  345 gcagccggttccaaacttcggtagttaactgccacaggg 383  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  36185220 gcagccggttccaaacttcggtagttaactgccgcaggg 36185182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 383
Target Start/End: Original strand, 35200785 - 35200841
Alignment:
Q  328 aacttcgatagttaactgcagccgg-ttccaaacttcggtagttaactgccacaggg 383  Q
    ||||||| ||||||||||||||||| ||| |||||||||||| |||||||| |||||    
T  35200785 aacttcggtagttaactgcagccggtttcaaaacttcggtagctaactgccgcaggg 35200841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 377
Target Start/End: Complemental strand, 30468499 - 30468452
Alignment:
Q  330 cttcgatagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||||||||||| | ||||| |||||| ||||    
T  30468499 cttcgatagttaactgcagccggttccataattcggcagttaaatgcc 30468452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 18219985 - 18220030
Alignment:
Q  332 tcgatagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||||||||| | ||||| | |||||||||    
T  18219985 tcgatagttaactgcagccggttccataattcggcaattaactgcc 18220030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 377
Target Start/End: Original strand, 29097890 - 29097931
Alignment:
Q  336 tagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||||| | ||||| |||||||||||    
T  29097890 tagttaactgcagccggttccataattcggcagttaactgcc 29097931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 377
Target Start/End: Original strand, 48901472 - 48901513
Alignment:
Q  336 tagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||||| | ||||| |||||||||||    
T  48901472 tagttaactgcagccggttccataattcggcagttaactgcc 48901513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 390
Target Start/End: Complemental strand, 4997401 - 4997341
Alignment:
Q  331 ttcgatagttaactgcagccggttccaaa-cttcggtagttaactgccacagggatatttt 390  Q
    |||| |||||||||| |||||||| |||| ||||||||||||||||||  |||| ||||||    
T  4997401 ttcggtagttaactgtagccggtttcaaaacttcggtagttaactgccgtaggggtatttt 4997341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 47750566 - 47750526
Alignment:
Q  337 agttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    ||||||||||||||||||||| | ||||| |||||||||||    
T  47750566 agttaactgcagccggttccataattcggcagttaactgcc 47750526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 375
Target Start/End: Original strand, 52427518 - 52427565
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaactg 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52427518 aacttcgatagttaactgcagccggttccaaacttcggtagttaactg 52427565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 328 - 383
Target Start/End: Original strand, 253302 - 253357
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaactgccacaggg 383  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| || |||||    
T  253302 aacttcggtagttaactgcagccggttccaaacttcggtagttaactaccgcaggg 253357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 328 - 383
Target Start/End: Complemental strand, 32160780 - 32160725
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaactgccacaggg 383  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||| |||||    
T  32160780 aacttcggaagttaactgcagccggttccaaacttcggtagttaactgccgcaggg 32160725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 336 - 383
Target Start/End: Original strand, 32161325 - 32161372
Alignment:
Q  336 tagttaactgcagccggttccaaacttcggtagttaactgccacaggg 383  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  32161325 tagttaactgcagccggttccaaacttcggtagttaactgccgcaggg 32161372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 328 - 383
Target Start/End: Original strand, 33206028 - 33206083
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaactgccacaggg 383  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||    
T  33206028 aacttcggtagttaactgcagccggttccaaacttcggtaattaactgccgcaggg 33206083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 383
Target Start/End: Complemental strand, 20114653 - 20114598
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaactgccacaggg 383  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||| || |||||    
T  20114653 aacttcggtagttaactgcagccggttcccaacttcggtagttaactaccgcaggg 20114598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 390
Target Start/End: Complemental strand, 21263406 - 21263355
Alignment:
Q  339 ttaactgcagccggttccaaacttcggtagttaactgccacagggatatttt 390  Q
    |||||||||| |||||||||||||||||||||||||||| ||||| ||||||    
T  21263406 ttaactgcagtcggttccaaacttcggtagttaactgccgcaggggtatttt 21263355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 26944527 - 26944478
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||  |||||||||||||||||||||||||||| ||||||||||||    
T  26944527 aacttcgggagttaactgcagccggttccaaacttcgatagttaactgcc 26944478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 383
Target Start/End: Original strand, 46320480 - 46320533
Alignment:
Q  330 cttcgatagttaactgcagccggttccaaacttcggtagttaactgccacaggg 383  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||| || |||||    
T  46320480 cttcggtagttaactgcagccggtttcaaacttcggtagttaactaccgcaggg 46320533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 337 - 377
Target Start/End: Original strand, 15660260 - 15660300
Alignment:
Q  337 agttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  15660260 agttaactgcagccggttccaaacatcggtagttaactgcc 15660300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 372
Target Start/End: Complemental strand, 15659915 - 15659871
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaa 372  Q
    |||||| ||||||||||| |||||||||||||||||| |||||||    
T  15659915 aacttcaatagttaactgtagccggttccaaacttcgatagttaa 15659871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 376
Target Start/End: Complemental strand, 28456497 - 28456453
Alignment:
Q  332 tcgatagttaactgcagccggttccaaacttcggtagttaactgc 376  Q
    |||||||||||||||||||||||||| | ||||| ||||||||||    
T  28456497 tcgatagttaactgcagccggttccataattcggcagttaactgc 28456453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 33205523 - 33205483
Alignment:
Q  337 agttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||| ||||||||||||||||||||||| ||||||||    
T  33205523 agttaactacagccggttccaaacttcggtaggtaactgcc 33205483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 374
Target Start/End: Complemental strand, 7820175 - 7820132
Alignment:
Q  331 ttcgatagttaactgcagccggttccaaacttcggtagttaact 374  Q
    ||||||||||||||||||||||||||| | ||||| ||||||||    
T  7820175 ttcgatagttaactgcagccggttccataattcggcagttaact 7820132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 374
Target Start/End: Complemental strand, 15354227 - 15354184
Alignment:
Q  331 ttcgatagttaactgcagccggttccaaacttcggtagttaact 374  Q
    |||| |||||||||| |||||||||||||||||| |||||||||    
T  15354227 ttcggtagttaactgtagccggttccaaacttcgatagttaact 15354184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 375
Target Start/End: Complemental strand, 49875051 - 49875008
Alignment:
Q  332 tcgatagttaactgcagccggttccaaacttcggtagttaactg 375  Q
    |||||||||||||||||||||||||| | ||||| |||||||||    
T  49875051 tcgatagttaactgcagccggttccataattcggcagttaactg 49875008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 375
Target Start/End: Original strand, 49875365 - 49875408
Alignment:
Q  332 tcgatagttaactgcagccggttccaaacttcggtagttaactg 375  Q
    ||||||||||||||||| |||||||| | |||||||||||||||    
T  49875365 tcgatagttaactgcagtcggttccataattcggtagttaactg 49875408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 378
Target Start/End: Complemental strand, 9618761 - 9618719
Alignment:
Q  336 tagttaactgcagccggttccaaacttcggtagttaactgcca 378  Q
    |||||||||||||||||||||| | ||||| ||||||||||||    
T  9618761 tagttaactgcagccggttccataattcggcagttaactgcca 9618719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 390
Target Start/End: Original strand, 26945247 - 26945301
Alignment:
Q  336 tagttaactgcagccggttccaaacttcggtagttaactgccacagggatatttt 390  Q
    |||||||||| || || ||| ||||||||||||||||||||| || |||||||||    
T  26945247 tagttaactgtagtcgattctaaacttcggtagttaactgccgcatggatatttt 26945301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 377
Target Start/End: Original strand, 6328897 - 6328938
Alignment:
Q  336 tagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||||| | ||||| |||||||||||    
T  6328897 tagttaactgcagccggttccataattcggcagttaactgcc 6328938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 28456747 - 28456792
Alignment:
Q  332 tcgatagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||||||| | | ||||| |||||||||||    
T  28456747 tcgatagttaactgcagccggttctataattcggcagttaactgcc 28456792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 377
Target Start/End: Original strand, 51461883 - 51461924
Alignment:
Q  336 tagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||||| | ||||| |||||||||||    
T  51461883 tagttaactgcagccggttccacaattcggcagttaactgcc 51461924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 377
Target Start/End: Original strand, 26607466 - 26607506
Alignment:
Q  337 agttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    ||||||||||||||||||||| | ||||| |||||||||||    
T  26607466 agttaactgcagccggttccataattcggcagttaactgcc 26607506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 27704555 - 27704603
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaactgc 376  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  27704555 aacttcggtagttaactgcagccggtttcaaacttcggtagttaactgc 27704603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 383
Target Start/End: Original strand, 7577613 - 7577668
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaactgccacaggg 383  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||    
T  7577613 aacttcggtagttaactgcagccggtttcaaacttcggtagttaattgccgcaggg 7577668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 383
Target Start/End: Complemental strand, 27704109 - 27704054
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaactgccacaggg 383  Q
    |||||||  |||||| |||||||||||||||||||||||||||||||||| |||||    
T  27704109 aacttcgggagttaattgcagccggttccaaacttcggtagttaactgccgcaggg 27704054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 375
Target Start/End: Complemental strand, 7577164 - 7577117
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaactg 375  Q
    |||||||  |||||| ||||||||||||||||||||||||||||||||    
T  7577164 aacttcgggagttaattgcagccggttccaaacttcggtagttaactg 7577117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 375
Target Start/End: Original strand, 37577755 - 37577802
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaactg 375  Q
    ||||||| ||||||| |||||||||||| |||||||||||||||||||    
T  37577755 aacttcggtagttaattgcagccggttcaaaacttcggtagttaactg 37577802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 375
Target Start/End: Complemental strand, 43519949 - 43519906
Alignment:
Q  332 tcgatagttaactgcagccggttccaaacttcggtagttaactg 375  Q
    |||||||||||||||||||||||||| | ||||| |||||||||    
T  43519949 tcgatagttaactgcagccggttccataattcggcagttaactg 43519906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 377
Target Start/End: Complemental strand, 3695410 - 3695369
Alignment:
Q  336 tagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||||| | ||||| |||||||||||    
T  3695410 tagttaactgcagccggttccataattcggcagttaactgcc 3695369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 377
Target Start/End: Complemental strand, 22960689 - 22960648
Alignment:
Q  336 tagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||||| | ||||| |||||||||||    
T  22960689 tagttaactgcagccggttccataattcggcagttaactgcc 22960648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 377
Target Start/End: Original strand, 30026264 - 30026305
Alignment:
Q  336 tagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||||| | ||||| |||||||||||    
T  30026264 tagttaactgcagccggttccataattcggcagttaactgcc 30026305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 377
Target Start/End: Original strand, 34503092 - 34503133
Alignment:
Q  336 tagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||||| | ||||| |||||||||||    
T  34503092 tagttaactgcagccggttccataattcggcagttaactgcc 34503133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 377
Target Start/End: Complemental strand, 36345046 - 36345005
Alignment:
Q  336 tagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||||| | ||||| |||||||||||    
T  36345046 tagttaactgcagccggttccataattcggcagttaactgcc 36345005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 377
Target Start/End: Complemental strand, 38133213 - 38133172
Alignment:
Q  336 tagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||||| | ||||| |||||||||||    
T  38133213 tagttaactgcagccggttccataattcggcagttaactgcc 38133172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 44886826 - 44886871
Alignment:
Q  332 tcgatagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||| ||||| | ||||| |||||||||||    
T  44886826 tcgatagttaactgcagccgattccataattcggcagttaactgcc 44886871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 23508636 - 23508596
Alignment:
Q  337 agttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    ||||||||||||||||||||| | ||||| |||||||||||    
T  23508636 agttaactgcagccggttccataattcggcagttaactgcc 23508596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 337 - 377
Target Start/End: Original strand, 35777049 - 35777089
Alignment:
Q  337 agttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35777049 agttaactgcagccggttccaaacttcggtagttaactgcc 35777089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 328 - 372
Target Start/End: Original strand, 2532526 - 2532570
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaa 372  Q
    |||||||  ||||||||||||||||||||||||||||||||||||    
T  2532526 aacttcgggagttaactgcagccggttccaaacttcggtagttaa 2532570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 328 - 390
Target Start/End: Original strand, 9070418 - 9070480
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaactgccacagggatatttt 390  Q
    |||||||  ||||||||||||| ||||||  ||||||||||||||||||| |||| |||||||    
T  9070418 aacttcggaagttaactgcagctggttccttacttcggtagttaactgccgcaggaatatttt 9070480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 374
Target Start/End: Complemental strand, 2532131 - 2532088
Alignment:
Q  331 ttcgatagttaactgcagccggttccaaacttcggtagttaact 374  Q
    |||| ||||||| ||||||||||||||||||||| |||||||||    
T  2532131 ttcggtagttaattgcagccggttccaaacttcgatagttaact 2532088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 8680272 - 8680317
Alignment:
Q  332 tcgatagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    ||||||||||||||||||| |||||| | ||||| |||||||||||    
T  8680272 tcgatagttaactgcagcctgttccataattcggcagttaactgcc 8680317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 29413301 - 29413350
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    ||||||| |||||||||||||||  || ||||||||| ||||||||||||    
T  29413301 aacttcggtagttaactgcagccaatttcaaacttcgatagttaactgcc 29413350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 372
Target Start/End: Original strand, 18848037 - 18848081
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaa 372  Q
    ||||||| ||||||||||||| |||||  ||||||||||||||||    
T  18848037 aacttcggtagttaactgcagtcggttttaaacttcggtagttaa 18848081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 383
Target Start/End: Complemental strand, 16941 - 16886
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaactgccacaggg 383  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||| || |||||    
T  16941 aacttcggtagttaactgcaaccggttccaaacttcggtagttaactaccgcaggg 16886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 17388 - 17437
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    ||||||| ||||||||||||||||||||   | |||||||||||||||||    
T  17388 aacttcggtagttaactgcagccggttcattatttcggtagttaactgcc 17437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 383
Target Start/End: Original strand, 11687917 - 11687972
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaactgccacaggg 383  Q
    |||||||  |||||| |||||||| ||||||||||||||||||||||||| |||||    
T  11687917 aacttcgggagttaattgcagccgattccaaacttcggtagttaactgccgcaggg 11687972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 11687498 - 11687452
Alignment:
Q  337 agttaactgcagccggttccaaacttcggtagttaactgccacaggg 383  Q
    ||||||||||||||||||  ||||||||||||||||||||| |||||    
T  11687498 agttaactgcagccggttttaaacttcggtagttaactgccgcaggg 11687452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 117300 - 117260
Alignment:
Q  337 agttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    ||||||||||||||||||||| | ||||| |||||||||||    
T  117300 agttaactgcagccggttccataattcggcagttaactgcc 117260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 377
Target Start/End: Original strand, 13164291 - 13164331
Alignment:
Q  337 agttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||| || | |||||||||||||||||    
T  13164291 agttaactgcagccggtttcataattcggtagttaactgcc 13164331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 25987186 - 25987138
Alignment:
Q  328 aacttcgatagttaactgcagccggttccaaacttcggtagttaactgc 376  Q
    ||||||||||||||||||||||| ||||   | ||||||||||||||||    
T  25987186 aacttcgatagttaactgcagccagttcattatttcggtagttaactgc 25987138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 575 - 530
Alignment:
Q  332 tcgatagttaactgcagccggttccaaacttcggtagttaactgcc 377  Q
    |||||||||||||||||||| ||||| | ||||| |||||||||||    
T  575 tcgatagttaactgcagccgattccataattcggcagttaactgcc 530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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