View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_64 (Length: 398)
Name: NF7850A_low_64
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_64 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 6 - 311
Target Start/End: Complemental strand, 5012345 - 5012040
Alignment:
| Q |
6 |
atccttttcatctgcaaaattacttccaggagttacgttccctccttgttgatgtgttgcatctaacacatgcctcgcggggtattgagaaggtgttcca |
105 |
Q |
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| T |
5012345 |
atccttttcatctgcaaaattacttccaggagttacgttccctccttgttgatgtgttgcatctaacacatgcctcgcggggtattgagaaggtgttcca |
5012246 |
T |
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| Q |
106 |
gcagtattcccaatatatctaacataacgaactggtatttctttgtgatctacctttttgaggataactttttcaaagatgggtgatttactctcaaact |
205 |
Q |
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| T |
5012245 |
gcagtattcccaatatatctagcataacgaactggtatttctttgtgatctacctttttgaggataactttttcaaagatgggtgatttactctcaaact |
5012146 |
T |
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| Q |
206 |
gaggcttaatcggtgcaggttttttgccgtgagctagcggttgagacacccataatgcattgatcggtgatagcttagcaggcctccctctctttcgtgg |
305 |
Q |
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| T |
5012145 |
gagtcttaatcggtgcaggttttttgccgtgagctagcggttgagacacccataatgaattgatcggtgatagcttagcaggcctccctctctttcgtgg |
5012046 |
T |
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| Q |
306 |
ttgtcc |
311 |
Q |
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|||||| |
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| T |
5012045 |
ttgtcc |
5012040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 342 - 387
Target Start/End: Complemental strand, 5012039 - 5011994
Alignment:
| Q |
342 |
ttccattttatcttttttgagtgacgaaacttcttgttcaagtata |
387 |
Q |
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| T |
5012039 |
ttccattttatcttttttgagtgacgaaacttcttgttcaagtata |
5011994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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