View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_65 (Length: 396)
Name: NF7850A_low_65
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 9e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 22 - 293
Target Start/End: Original strand, 40786948 - 40787213
Alignment:
| Q |
22 |
gttataacctaacaagcaatattggttaaccaaccacaaaatttacttgtttcttatccaatctnnnnnnnnnnnnnnnnnnnnnnnnccttgcttgtgc |
121 |
Q |
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| T |
40786948 |
gttataacctaacaagcaatattggttaaccaaccacaaaatttacttgtttcttatccaatctaaaaagattaaaaagaaaataaaaccttgcttgtgc |
40787047 |
T |
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| Q |
122 |
ccaaagtcacataacagaacaagcattaggattttcatcactaaacatttgtggtgcttcctgcatatgcatcatttgaacttgtccatagttataacct |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40787048 |
ccaaagtcacataacagaacaagcattaggattttcatcactaaacatttgtggtgcttcctgcatatgcatcatttgaacttgtccatagttataacct |
40787147 |
T |
|
| Q |
222 |
tcatcaaatccnnnnnnnccaccatatccataaccattaccataaccataaccgtaactaggttgtgtcaaa |
293 |
Q |
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||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40787148 |
tcatcaaatccaaaaaaaccaccatatccataaccatt------accataaccgtaactaggttgtgtcaaa |
40787213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 166
Target Start/End: Original strand, 46556197 - 46556235
Alignment:
| Q |
128 |
tcacataacagaacaagcattaggattttcatcactaaa |
166 |
Q |
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| T |
46556197 |
tcacataactgaacaagcattaggattttcatcactaaa |
46556235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 41142954 - 41142991
Alignment:
| Q |
138 |
gaacaagcattaggattttcatcactaaacatttgtgg |
175 |
Q |
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| T |
41142954 |
gaacaagcattcggattttcatcactaaacatttgtgg |
41142991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 33236026 - 33235985
Alignment:
| Q |
130 |
acataacagaacaagcattaggattttcatcactaaacattt |
171 |
Q |
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| T |
33236026 |
acataatagaacaagcatttggattttcatcactgaacattt |
33235985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 21269826 - 21269790
Alignment:
| Q |
141 |
caagcattaggattttcatcactaaacatttgtggtg |
177 |
Q |
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|||||||| ||||| |||||||||||||||||||||| |
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| T |
21269826 |
caagcatttggattctcatcactaaacatttgtggtg |
21269790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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