View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7850A_low_7 (Length: 596)
Name: NF7850A_low_7
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_7 |
 | |
|
| [»] scaffold0065 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 465; Significance: 0; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 11 - 579
Target Start/End: Original strand, 3002680 - 3003248
Alignment:
| Q |
11 |
tcaattgagtacttatttgatgtgtggtgctcaaggccgtaatgttgtagtgacaactcgtagtaaaattgtggcacagataatgggtgtaagtgaccac |
110 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||| || ||| |||||||||||||||||||| ||||||||| | |||||||||||| || | | |
|
|
| T |
3002680 |
tcaattgaggacttatttgatgtgtgatgctcaaggcaccaaggttttagtgacaactcgtagtaaagctgtggcacaaacaatgggtgtaagagagccc |
3002779 |
T |
|
| Q |
111 |
tatgttttaagtggtttaacttcagaacaatcatggggtttgttaaagaagattgcgtttggggatgataccattggagtgaatcaaactcttgagtcaa |
210 |
Q |
| |
|
||| |||| | |||||| ||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3002780 |
tattttttgaatggtttgactccagaagaatcatgaagtttgttaaagaagattgcgtttggggatgataccattggagtgaatcaaactcttgagtcaa |
3002879 |
T |
|
| Q |
211 |
ttggtaagaagatagtgaaaaagtgcagaggagttccattagcaattagatcattgggaggcatattacgaaataaaagtgaagaaagggaatggatcga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3002880 |
ttggtaagaagatagtgaaaaagtgcagaggagttccattagcaattagataattgggaggcatattacaaaataaaagtgaagaaagggaatggatcga |
3002979 |
T |
|
| Q |
311 |
tgtcttacaaggtgaattttggaaattgtgtgaggataacgataccattttgccggtcctaaaattgagttaccaaaatttgtcatttcaacagagacaa |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3002980 |
tgtcttacaaggtgaattttggaaattgtgtgaggataacggtaccattttgccggtcctaaaattgagttaccaaaatttgtcatttcaacagagacaa |
3003079 |
T |
|
| Q |
411 |
tgttttgcttattgtgctttatatcctaaggattgggtaattgagaaggacgagttgattcaaatgtggatggcgcaaggttatcttgaatgttcaattg |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3003080 |
tgttttgcttattgtgctttatatcctaaggattgggtaattgagaaggacgagttgattcaaatgtggatggcgcaaggttatcttgaatgttcaattg |
3003179 |
T |
|
| Q |
511 |
aaaagcactgcatagaagatgttggtaaccaatttgtgaatattttcttgatgaaatcattcttccaag |
579 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3003180 |
aaaagcactgcatggaagatgttggtaaccaatttgtgaatattttcttgatgaaatcattcttccaag |
3003248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 1 - 579
Target Start/End: Complemental strand, 2711054 - 2710476
Alignment:
| Q |
1 |
aaaagttggatcaattgagtacttatttgatgtgtggtgctcaaggccgtaatgttgtagtgacaactcgtagtaaaattgtggcacagataatgggtgt |
100 |
Q |
| |
|
|||||| |||| ||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
2711054 |
aaaagtgggatgaattgaggacttatttgatgtgtggtgctcaaggcagtaaggttgtagtgacaactcgtagtaaaattgtggcacaaacaatgggtgt |
2710955 |
T |
|
| Q |
101 |
aagtgaccactatgttttaagtggtttaacttcagaacaatcatggggtttgttaaagaagattgcgtttggggatgataccattggagtgaatcaaact |
200 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| ||||| |||| ||||||||||||||||| ||| | ||| ||||||| ||||||||||||| |||||| |
|
|
| T |
2710954 |
aagtgacccctatgttttgagtggtttaactccagaagaatcttggggtttgttaaagaatattacctttccggatgatgccattggagtgaaccaaact |
2710855 |
T |
|
| Q |
201 |
cttgagtcaattggtaagaagatagtgaaaaagtgcagaggagttccattagcaattagatcattgggaggcatattacgaaataaaagtgaagaaaggg |
300 |
Q |
| |
|
||||| ||||||| |||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||| |
|
|
| T |
2710854 |
cttgaaccaattggaaagaagatagcagaaaagtgcaaaggagttccattagcaattagatcactgggaggcatattacgaagtaaaagggaagaaaggg |
2710755 |
T |
|
| Q |
301 |
aatggatcgatgtcttacaaggtgaattttggaaattgtgtgaggataacgataccattttgccggtcctaaaattgagttaccaaaatttgtcatttca |
400 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||| |||||||| |||| ||| ||||||||||||||||||||||| | || ||||| ||| |
|
|
| T |
2710754 |
agtggatcgatgtcttacaaggtgacttttggaaattgtgcgaggataaagatagcatcatgccggtcctaaaattgagttacaataacttgtcgcctca |
2710655 |
T |
|
| Q |
401 |
acagagacaatgttttgcttattgtgctttatatcctaaggattgggtaattg-agaaggacgagttgattcaaatgtggatggcgcaaggttatcttga |
499 |
Q |
| |
|
||| |||||||||||||||||||| || ||| |||| | |||| || ||||| ||||||| ||||| |||||||||||||| || ||||| ||||||| |
|
|
| T |
2710654 |
acaaagacaatgttttgcttattgctctatatttcctcaagatt-ggaaattgaagaaggatgagttaattcaaatgtggatagcacaaggatatcttgg |
2710556 |
T |
|
| Q |
500 |
atgttcaattgaaaagcactgcatagaagatgttggtaaccaatttgtgaatattttcttgatgaaatcattcttccaag |
579 |
Q |
| |
|
||||||| ||||| |||| ||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
2710555 |
atgttcagttgaagagcaatgcatggaagatgttggtaatcaatttgtaaatattttcttgatgaattcattcttccaag |
2710476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 579
Target Start/End: Original strand, 2989682 - 2990260
Alignment:
| Q |
1 |
aaaagttggatcaattgagtacttatttgatgtgtggtgctcaaggccgtaatgttgtagtgacaactcgtagtaaaattgtggcacagataatgggtgt |
100 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||| |||| |||||| ||||||| | ||||| ||||||||| | | ||||||||| |
|
|
| T |
2989682 |
aaaagtgggatcaattgaggccttatttgatgtgtggtgctcaaggcagtaaggttgtaatgacaacatgcagtaagattgtggcagatagaatgggtgt |
2989781 |
T |
|
| Q |
101 |
aagtgaccactatgttttaagtggtttaacttcagaacaatcatggggtttgttaaagaagattgcgtttggggatgataccattggagtgaatcaaact |
200 |
Q |
| |
|
||||||||| ||||||| || ||||||||| ||||| ||||||||| |||||| ||||| |||| |||||||||| ||| |||||||||| ||| || |
|
|
| T |
2989782 |
aagtgaccaacatgttttgagaggtttaactccagaaaaatcatgggttttgttcaagaatattgtctttggggatgttactgttggagtgaaccaacct |
2989881 |
T |
|
| Q |
201 |
cttgagtcaattggtaagaagatagtgaaaaagtgcagaggagttccattagcaattagatcattgggaggcatattacgaaataaaagtgaagaaaggg |
300 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||| | |||||||||||||||| | ||||| ||||||| | |
|
|
| T |
2989882 |
cttgaatcaattggtaagaagatagcagaaaagtgcaaaggagttccgttagcaattagatcactaggaggcatattacgaagtgaaagtaaagaaagtg |
2989981 |
T |
|
| Q |
301 |
aatggatcgatgtcttacaaggtgaattttggaaattgtgtgaggataacgataccattttgccggtcctaaaattgagttaccaaaatttgtcatttca |
400 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||| | | | ||| ||| ||||||||||||||||||||||||| || || ||| ||| |
|
|
| T |
2989982 |
aatggatcaatgtcttacaaggtgaatgttggaaattgtgtgatggtgaaaatagcatcatgccggtcctaaaattgagttaccagaacttatcacctca |
2990081 |
T |
|
| Q |
401 |
acagagacaatgttttgcttattgtgctttatatcctaaggattgggtaattgagaaggacgagttgattcaaatgtggatggcgcaaggttatcttgaa |
500 |
Q |
| |
|
||| || ||||||||||||||||| |||||| |||| ||||||||| | |||||||||| ||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
2990082 |
acaaaggcaatgttttgcttattgctctttatttcctcaggattgggaatttgagaaggatgagttaattcaaatgtggatggcacaaggttatcttggt |
2990181 |
T |
|
| Q |
501 |
tgttcaattgaaaagcactgcatagaagatgttggtaaccaatttgtgaatattttcttgatgaaatcattcttccaag |
579 |
Q |
| |
|
|||||| ||||||| || ||||| |||||||||||||| |||||||| ||||||||||||| ||| ||||||||||||| |
|
|
| T |
2990182 |
tgttcagttgaaaatcaatgcatggaagatgttggtaatcaatttgtaaatattttcttgaagaattcattcttccaag |
2990260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 579
Target Start/End: Complemental strand, 9850855 - 9850287
Alignment:
| Q |
11 |
tcaattgagtacttatttgatgtgtggtgctcaaggccgtaatgttgtagtgacaactcgtagtaaaattgtggcacagataatgggtgtaagtgaccac |
110 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| |||| ||||||||||| ||||||||| |||||||||||| | ||||||||||||| || |
|
|
| T |
9850855 |
tcaattgaagacttatttgatgtgtggggctcaaggaagtaaggttgtagtgacgactcgtagtgcaattgtggcacaaaccatgggtgtaagtgtccct |
9850756 |
T |
|
| Q |
111 |
tatgttttaagtggtttaacttcagaacaatcatggggtttgttaaagaagattgcgtttggggatgataccattggagtgaatcaaactcttgagtcaa |
210 |
Q |
| |
|
|||||||| | |||||| | | ||||| |||| ||| || | |||||||| ||||| | | ||||||||||||||||||||||| ||| |||| |||| |
|
|
| T |
9850755 |
tatgttttgaatggtttgattccagaagaatcttggagtctattaaagaaaattgcatcttgggatgataccattggagtgaatagaaccattgaatcaa |
9850656 |
T |
|
| Q |
211 |
ttggtaagaagatagtgaaaaagtgcagaggagttccattagcaattagatcattgggaggcatattacgaaataaaagtgaagaaagggaatggatcga |
310 |
Q |
| |
|
|||||| |||||||| | ||||||||| |||||||||||||||||||||||| || ||||||||||||| || |||||||||||||||||||| ||| || |
|
|
| T |
9850655 |
ttggtaggaagatagcggaaaagtgcaaaggagttccattagcaattagatcgttaggaggcatattacaaagtaaaagtgaagaaagggaattgattga |
9850556 |
T |
|
| Q |
311 |
tgtcttacaaggtgaattttggaaattgtgtgaggataacgataccattttgccggtcctaaaattgagttaccaaaatttgtcatttcaacagagacaa |
410 |
Q |
| |
|
|||| ||||||| | |||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||||| || ||||| |||||| |||||| |
|
|
| T |
9850555 |
tgtcctacaaggaaatttttggaacttgtgtgaggataaagatagcatcatgccggtcctaaaattgagttaccataacttgtcgcctcaacaaagacaa |
9850456 |
T |
|
| Q |
411 |
tgttttgcttattgtgctttatatcctaaggattgggtaattgagaaggacgagttgattcaaatgtggatggcgcaaggttatcttgaatgttcaattg |
510 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| | |||||||||| |||||||||| ||||||||||||||| ||||||||||| |||||| ||| |
|
|
| T |
9850455 |
tgttttgcttattgctctttatatcctaaggattgggaatttgagaaggatgagttgattcgaatgtggatggcgcatggttatcttgactgttcagttg |
9850356 |
T |
|
| Q |
511 |
aaaagcactgcatagaagatgttggtaaccaatttgtgaatattttcttgatgaaatcattcttccaag |
579 |
Q |
| |
|
|| | | |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9850355 |
aagggaagagcatggaagatgttggtaaccaatttgttaatattttcttgatgaaatcattcttccaag |
9850287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 1 - 579
Target Start/End: Original strand, 2980577 - 2981158
Alignment:
| Q |
1 |
aaaagttggatcaattgagtacttatttgatgtgtggtgctcaaggccgtaatgttgtagtgacaactcgtagtaaaattgtggcacagataatgggtgt |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||||||| ||| |||||||||| | || |||||||||||||||||||| || |||||||| | ||||||||| |
|
|
| T |
2980577 |
aaaagtgggatcaattgacgacttatttgatgcgtgatgctcaaggcagcaagattgtagtgacaactcgtagtgaatcagtggcacaaacaatgggtgt |
2980676 |
T |
|
| Q |
101 |
aagtgaccactatgttttaagtggtttaacttcagaacaatcatggggtttgttaaagaag---attgcgtttggggatgataccattggagtgaatcaa |
197 |
Q |
| |
|
|||| || ||||||||| | ||| || ||| | || |||| ||| | |||||||||| ||| | | |||| |||| | ||||||| | | |
|
|
| T |
2980677 |
aagtagcccctatgttttgaatggcttgactccccaagaatcgtggcgattgttaaagactgtcattacatatgggaatgagaaacaaggagtgagccga |
2980776 |
T |
|
| Q |
198 |
actcttgagtcaattggtaagaagatagtgaaaaagtgcagaggagttccattagcaattagatcattgggaggcatattacgaaataaaagtgaagaaa |
297 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||| || ||||| ||||||| |
|
|
| T |
2980777 |
actcttgagtcaattggtgagaagatagcagaaaagtgcaaaggagttccattagcaataagatcattgggaggcatattacaaagcaaaagggaagaaa |
2980876 |
T |
|
| Q |
298 |
gggaatggatcgatgtcttacaaggtgaattttggaaattgtgtgaggataacgataccattttgccggtcctaaaattgagttaccaaaatttgtcatt |
397 |
Q |
| |
|
|||| ||||| || |||||||||||||| |||||||||||||| |||||||| |||| ||| ||||| ||||||| |||||||||| | || |||||| |
|
|
| T |
2980877 |
gggagtggattgaagtcttacaaggtgacttttggaaattgtgcgaggataaagatagcatcttgccagtcctaagattgagttactataacttgtcacc |
2980976 |
T |
|
| Q |
398 |
tcaacagagacaatgttttgcttattgtgctttatatcctaaggattgggtaattgagaaggacgagttgattcaaatgtggatggcgcaaggttatctt |
497 |
Q |
| |
|
|||||| || ||||||||||||||||| |||||| ||| |||||||| | || |||||| || || ||||||||||||||||| |||||||||||| |
|
|
| T |
2980977 |
tcaacaaaggcaatgttttgcttattgctctttatttccccaggattggaaatttatgaaggatgaattaattcaaatgtggatggcacaaggttatctt |
2981076 |
T |
|
| Q |
498 |
gaatgttcaattgaaaagcactgcatagaagatgttggtaaccaatttgtgaatattttcttgatgaaatcattcttccaag |
579 |
Q |
| |
|
|| ||||| |||||||||| ||||| ||||||||||||| |||||||| ||||||||||||| ||| ||||||||||||| |
|
|
| T |
2981077 |
gacggttcagttgaaaagcaatgcatgaaagatgttggtaatcaatttgtaaatattttcttgaagaattcattcttccaag |
2981158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 15 - 499
Target Start/End: Complemental strand, 2910924 - 2910437
Alignment:
| Q |
15 |
ttgagtacttatttgatgtgtggtgctcaaggccgtaatgttgtagtgacaactcgtagtaaaattgtggcacagataatgggtgtaagtgaccactatg |
114 |
Q |
| |
|
||||| ||||| ||||||||||||||| ||| | | || || ||||||| ||||||||||||| ||||||||||| |||||||||| | |||| |||| |
|
|
| T |
2910924 |
ttgaggacttacttgatgtgtggtgctaaagacagcaagattttagtgacgactcgtagtaaaactgtggcacagacaatgggtgtatgcgacccttatg |
2910825 |
T |
|
| Q |
115 |
ttttaagtggtttaacttcagaacaatcatggggtttgttaaagaagat---tgcgtttggggatgataccattggagtgaatcaaactcttgagtcaat |
211 |
Q |
| |
|
|||| | |||||| ||| ||||| |||||||| ||||||||||||| || | | | |||| |||| || | |||||| |||||||||| ||||| |
|
|
| T |
2910824 |
ttttgaatggtttgactccagaagaatcatggagtttgttaaagaacatcattacatatgggaatgaggcccaagcagtgaacgaaactcttgaatcaat |
2910725 |
T |
|
| Q |
212 |
tggtaagaagatagtgaaaaagtgcagaggagttccattagcaattagatcattgggaggcatattacgaaataaaagtgaagaaagggaatggatcgat |
311 |
Q |
| |
|
||||| | |||||| |||||||||| || |||||| |||| |||||| |||| |||||| |||| | | ||| ||| || |||| ||||||| | || |
|
|
| T |
2910724 |
tggtatggagatagcagaaaagtgcagtggggttccactagctattagaacattaggaggcctattgcaaggtaagagtaaacaaagtgaatggaacaat |
2910625 |
T |
|
| Q |
312 |
gtcttacaaggtgaattttggaaattgtgtgaggataacgataccattttgccggtcctaaaattgagttaccaaaatttgtcatttcaacagagacaat |
411 |
Q |
| |
|
|||||||||||||| ||||||| ||| || | || | ||| ||| ||||||| || ||| ||||||||||||| |||||| |||||||||||||| |
|
|
| T |
2910624 |
gtcttacaaggtgacttttggagattatgccaagacgaaaatagcatcgtgccggttctgaaactgagttaccaaaacttgtcacctcaacagagacaat |
2910525 |
T |
|
| Q |
412 |
gttttgcttattgtgctttatatcctaaggattgggtaattgagaaggacgagttgattcaaatgtggatggcgcaaggttatcttga |
499 |
Q |
| |
|
||||||| ||||| || |||||||||||||||||| ||| |||||||| |||||||||||| | || || || |||||||||||||| |
|
|
| T |
2910524 |
gttttgcatattgctctatatatcctaaggattgggaaatagagaaggatgagttgattcaactatgcattgcacaaggttatcttga |
2910437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 229 - 579
Target Start/End: Original strand, 13791853 - 13792203
Alignment:
| Q |
229 |
aaaagtgcagaggagttccattagcaattagatcattgggaggcatattacgaaataaaagtgaagaaagggaatggatcgatgtcttacaaggtgaatt |
328 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| | ||||||||| || | | || ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
13791853 |
aaaagtgcatgggagttccactagcaattagaactttgggaggcttactgcaaaggaaaagtgaagaaagggaatggatcgatgtcttacaaggtgactt |
13791952 |
T |
|
| Q |
329 |
ttggaaattgtgtgaggataacgataccattttgccggtcctaaaattgagttaccaaaatttgtcatttcaacagagacaatgttttgcttattgtgct |
428 |
Q |
| |
|
|||| |||| || || || || || | ||| | | | |||| ||||| |||||||||| |||||| ||||| ||||||||||||||||||||| || |
|
|
| T |
13791953 |
ttgggaattatgcgaagacaaagaaagcatctcgtcaatcctgaaatttagttaccaaagtttgtcgcttcaattgagacaatgttttgcttattgctct |
13792052 |
T |
|
| Q |
429 |
ttatatcctaaggattgggtaattgagaaggacgagttgattcaaatgtggatggcgcaaggttatcttgaatgttcaattgaaaagcactgcatagaag |
528 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| | |||||||||| | |||||||| || |||||||||||||| || |||||| || ||| |||| |
|
|
| T |
13792053 |
ttatatcccaaggattgggaaattgagaaggatgcgttgattcaactttggatggcacagggttatcttgaatgcacagatgaaaaacaactcatggaag |
13792152 |
T |
|
| Q |
529 |
atgttggtaaccaatttgtgaatattttcttgatgaaatcattcttccaag |
579 |
Q |
| |
|
||| |||||| |||||||||| ||||| ||||| || ||||| ||||||| |
|
|
| T |
13792153 |
atgccggtaacgaatttgtgaagattttgttgataaagtcatttttccaag |
13792203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 11 - 579
Target Start/End: Complemental strand, 3141921 - 3141350
Alignment:
| Q |
11 |
tcaattgagtacttatttgatgtgtggtgctcaaggccgtaatgttgtagtgacaactcgtagtaaaattgtggcacagataatgggtgtaagtgaccac |
110 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| ||||| |||| |||||||||||||||||| ||||||||| ||| | | |||||||||||| | | | |
|
|
| T |
3141921 |
tcaattgaggacttatttgatgtatggtgctaaaggcagtaaggttgtagtgacaactcgttctaaaattgttgcagaaagaatgggtgtaagcgtctcc |
3141822 |
T |
|
| Q |
111 |
tatgttttaagtggtttaacttcagaacaatcatggggtttgttaaagaagattg---cgtttggggatgataccattggagtgaatcaaactcttgagt |
207 |
Q |
| |
|
||| ||| | |||||| ||| |||| |||| ||| ||||||| | ||| ||| | | ||||||||| || | | ||| || ||||||||||| |
|
|
| T |
3141821 |
tataatttgaatggtttgactctagaaaaatcttggagtttgttgacgaacattattacatatggggatgagacgaaagcagtaaaccaaactcttgaaa |
3141722 |
T |
|
| Q |
208 |
caattggtaagaagatagtgaaaaagtgcagaggagttccattagcaattagatcattgggaggcatattacgaaataaaagtgaagaaagggaatggat |
307 |
Q |
| |
|
||||||| |||||||| | |||||||||| || |||||| | ||||| ||| || | |||||| |||| | |||| ||||||||| |||||||| |
|
|
| T |
3141721 |
caattggcaagaagattgcagaaaagtgcagtggtgttccacttgcaatcagaacactaggaggcctattgcagggcaaaaatgaagaaagagaatggat |
3141622 |
T |
|
| Q |
308 |
cgatgtcttacaaggtgaattttggaaattgtgtgaggataacgataccattttgccggtcctaaaattgagttaccaaaatttgtcatttcaacagaga |
407 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||||| || | || | ||| ||||||| | ||| ||||||||||||| ||||| ||||| | |
|
|
| T |
3141621 |
tgatgttttacaaggtgacttttggaaattatgtgaagacgaagaaagcatcatgccggtgttgaaactgagttaccaaaacttgtctcctcaactacgg |
3141522 |
T |
|
| Q |
408 |
caatgttttgcttattgtgctttatatcctaaggattgggtaattgagaaggacgagttgattcaaatgtggatggcgcaaggttatcttgaatgttcaa |
507 |
Q |
| |
|
||||||||||| || || |||||||| |||| |||||| ||| |||||||| |||||||||||| | |||||||| ||||||||||| |||||||| |
|
|
| T |
3141521 |
caatgttttgcctactgctctttatatactaaagattggaaaatagagaaggatgagttgattcaactatggatggcacaaggttatctcgaatgttctg |
3141422 |
T |
|
| Q |
508 |
ttgaaaagcactgcatagaagatgttggtaaccaatttgtgaatattttcttgatgaaatcattcttccaag |
579 |
Q |
| |
|
||||||||| |||| ||||| | |||||||||||||||| ||||| |||||||| || || ||||||| |
|
|
| T |
3141421 |
atgaaaagcagcgcatggaagacatcggtaaccaatttgtgacgattttattgatgaagtcttttttccaag |
3141350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 13 - 496
Target Start/End: Complemental strand, 2915884 - 2915398
Alignment:
| Q |
13 |
aattgagtacttatttgatgtgtggtgctcaaggccgtaatgttgtagtgacaactcgtagtaaaattgtggcacagataatgggtgtaagtgaccacta |
112 |
Q |
| |
|
||||||| ||||| ||||||||||||||| ||||| |||| || ||||||| ||||| ||||||| |||||||| || |||||||||| |||||| || |
|
|
| T |
2915884 |
aattgagaacttacttgatgtgtggtgctaaaggcagtaagattttagtgacgactcggagtaaaactgtggcacggacaatgggtgtatgtgaccctta |
2915785 |
T |
|
| Q |
113 |
tgttttaagtggtttaacttcagaacaatcatggggtttgttaaagaagattg---cgtttggggatgataccattggagtgaatcaaactcttgagtca |
209 |
Q |
| |
|
|| ||| | |||||| ||| ||||| |||||||||||||||||||||| |||| | | || |||| | |||||||| |||||||||| ||| |
|
|
| T |
2915784 |
tgctttgaatggtttgactccagaagaatcatggggtttgttaaagaacattgttacatacggtaatgaggctgaaggagtgaacaaaactcttgaatca |
2915685 |
T |
|
| Q |
210 |
attggtaagaagatagtgaaaaagtgcagaggagttccattagcaattagatcattgggaggcatattacgaaataaaagtgaagaaagggaatggatcg |
309 |
Q |
| |
|
||||||| | |||||| |||| ||||||||||||||| |||| |||||| |||| |||||| |||| | || ||||||| |||| || ||||||| | |
|
|
| T |
2915684 |
attggtatggagatagcagaaaaatgcagaggagttccactagctattagaacattaggaggcctattgcaaagtaaaagtaaagagagtgaatggaaca |
2915585 |
T |
|
| Q |
310 |
atgtcttacaaggtgaattttggaaattgtgtgaggataacgataccattttgccggtcctaaaattgagttaccaaaatttgtcatttcaacagagaca |
409 |
Q |
| |
|
||||||| |||||||| || |||| ||| || || ||| | ||| ||| ||||||| || ||| |||| || | ||| ||||| ||| || ||||| |
|
|
| T |
2915584 |
atgtcttgcaaggtgacttatggagattatgcgaagatgaaaatagcatcatgccggttctgaaactgagctatcgaaacttgtcgcctcagcacagaca |
2915485 |
T |
|
| Q |
410 |
atgttttgcttattgtgctttatatcctaaggattgggtaattgagaaggacgagttgattcaaatgtggatggcgcaaggttatct |
496 |
Q |
| |
|
||| ||||| ||||| | |||||||||||||||||| ||| |||||||| |||| |||||| |||| ||||| ||||||||||| |
|
|
| T |
2915484 |
atgctttgcatattgctccgtatatcctaaggattgggaaatagagaaggatgagtggattcagctgtgcatggcacaaggttatct |
2915398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 11 - 571
Target Start/End: Complemental strand, 3170025 - 3169459
Alignment:
| Q |
11 |
tcaattgagtacttatttgatgtgtggtgctcaaggccgtaatgttgtagtgacaactcgtagtaaaattgtggcacagataatgggtgtaagtgaccac |
110 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||| ||||| | |||||||||||||| || | |
|
|
| T |
3170025 |
tcaattgaagacttatttgatgtgtggtgctcaaggtagtaaggttgtagtgacaactcgtagtaaagttgtagcacaaacaatgggtgtaagtgtcccc |
3169926 |
T |
|
| Q |
111 |
tatgttttaagtggtttaacttcagaacaatcatggggtttgttaaagaaga---ttgcgtttggggatgataccattggag---tgaatcaaactcttg |
204 |
Q |
| |
|
||| ||| | |||||| ||| |||| |||| ||| ||||||| ||||| | || | | |||||||| || | |||| |||| |||||||||| |
|
|
| T |
3169925 |
tatactttgaatggtttgactccagagaaatcttggagtttgttgaagaacatcgttacatacggggatgagacaaaaggagttttgaaccaaactcttg |
3169826 |
T |
|
| Q |
205 |
agtcaattggtaagaagatagtgaaaaagtgcagaggagttccattagcaattagatcattgggaggcatattacgaaataaaagtgaagaaagggaatg |
304 |
Q |
| |
|
| | |||||||||||||||| ||||||||| || |||||| ||||||| ||| || | |||||| | |||| | ||||||||| |||| ||||| |
|
|
| T |
3169825 |
aaactattggtaagaagatagctgtaaagtgcagtggtgttccactagcaatcagaacactaggaggccttttacaaggtaaaagtgatgaaactgaatg |
3169726 |
T |
|
| Q |
305 |
gatcgatgtcttacaaggtgaattttggaaattgtgtgaggataacgataccattttgccggtcctaaaattgagttaccaaaatttgtcatttcaacag |
404 |
Q |
| |
|
| | | ||| ||||||| ||| |||||||| || ||||| || | || | ||| |||| || | ||| |||||||||| || |||||| |||| |
|
|
| T |
3169725 |
ggttggtgttttacaagatgacttttggaagttatgtgaagaagaagaaagcatcatgccagtgttgaaactgagttaccataacttgtcaccccaactt |
3169626 |
T |
|
| Q |
405 |
agacaatgttttgcttattgtgctttatatcctaaggattgggtaattgagaaggacgagttgattcaaatgtggatggcgcaaggttatcttgaatgtt |
504 |
Q |
| |
|
|||||||||||||| || |||||| ||||||||||||||||| ||| | ||| | ||||| ||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
3169625 |
agacaatgttttgcatactgtgctatatatcctaaggattggaaaatacataagcatgagttaattcatttgtggatggcacaaggttatcttgaatgtt |
3169526 |
T |
|
| Q |
505 |
caattgaaaagca-ctgcatagaagatgttggtaaccaatttgtgaatattttcttgatgaaatcatt |
571 |
Q |
| |
|
| | |||| | ||| || |||||| ||||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
3169525 |
cggctaaaaaaaagctg-atggaagatattggtaaccaattcgtaaatattttcttgatgaagtcatt |
3169459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 15 - 579
Target Start/End: Complemental strand, 3282255 - 3281691
Alignment:
| Q |
15 |
ttgagtacttatttgatgtgtggtgctcaaggccgtaatgttgtagtgacaactcgtagtaaaattgtggcacagataatgggtgtaagtgaccactatg |
114 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| |||| || || ||||||||||||||||||||||| || ||| | | | ||| | | ||||| |
|
|
| T |
3282255 |
ttgagaacttatttgatgtgtggtgctgaagatagtaagattttaatgacaactcgtagtaaaattgtgtcagagagactagaaacaagcaaactctatg |
3282156 |
T |
|
| Q |
115 |
ttttaagtggtttaacttcagaacaatcatggggtttgttaaagaagattgcgtttggggatgataccattggagtgaatcaaactcttgagtcaattgg |
214 |
Q |
| |
|
|||| | ||||||||| ||| ||| ||| || |||||||||| ||| | |||||| |||| | || || |||| |||||| ||||| |||||||| |
|
|
| T |
3282155 |
ttttgaatggtttaacactagatgtatcttggagtatgttaaagaaaattacatttgggaatgaaatcagtgtagtggatcaaaaccttgaatcaattgg |
3282056 |
T |
|
| Q |
215 |
taagaagatagtgaaaaagtgcagaggagttccattagcaattagatcattgggaggcatattacgaaataaaagtgaagaaagggaatggatcgatgtc |
314 |
Q |
| |
|
||| || || | ||||||||| ||||||||| ||||||||| | ||||||||||| |||||| | |||||| ||||||||||||||||| ||||| |
|
|
| T |
3282055 |
taaaaaaattgcagaaaagtgcatgggagttccactagcaattaaaacattgggaggcctattacagagtaaaagcaaagaaagggaatggatcaatgtc |
3281956 |
T |
|
| Q |
315 |
ttacaaggtgaattttggaaattgtgtgaggataacgataccattttgccggtcctaaaattgagttaccaaaatttgtcatttcaacagagacaatgtt |
414 |
Q |
| |
|
|||||||| ||||||||| ||| ||||| || | | | ||| || | |||| | |||| ||||||||| |||||| ||| ||||||||||| |
|
|
| T |
3281955 |
ttacaaggcgaattttgggaatcatgtgaagacgaaaaaagcatcatgttgatcctgacattgggttaccaaagtttgtcgcttcggttgagacaatgtt |
3281856 |
T |
|
| Q |
415 |
ttgcttattgtgctttatatcctaaggattgggtaattgagaaggacgagttgattcaaatgtggatggcgcaaggttatcttgaatgttca-attgaaa |
513 |
Q |
| |
|
|||||||||| || ||| |||||||||||||| ||| |||||||| |||||||||| | |||||||| ||||||||||||||||| ||| || | || |
|
|
| T |
3281855 |
ttgcttattgctctctatttcctaaggattgggaaatcgagaaggatatgttgattcaactttggatggcacaaggttatcttgaatgctcagatggtaa |
3281756 |
T |
|
| Q |
514 |
agcactgcatagaagatgttggtaaccaatttgtgaatattttcttgatgaaatcattcttccaag |
579 |
Q |
| |
|
| ||| | | |||||||| |||||| |||||||||| ||| ||||||| || ||||| ||||||| |
|
|
| T |
3281755 |
acaact-cctggaagatgtcggtaacgaatttgtgaagattctcttgataaagtcatttttccaag |
3281691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 11 - 579
Target Start/End: Complemental strand, 3173590 - 3173023
Alignment:
| Q |
11 |
tcaattgagtacttatttgatgtgtggtgctcaaggccgtaatgttgtagtgacaactcgtagtaaaattgtggcacagataatgggtgtaagtgaccac |
110 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||| | |||| ||| ||||||||||||||| ||||||||| ||||| | |||||||||||||| || |
|
|
| T |
3173590 |
tcaattgaggactcatttgatgtgtggtgctcaagacagtaaggttatagtgacaactcgtaataaaattgtagcacaaacaatgggtgtaagtgtccct |
3173491 |
T |
|
| Q |
111 |
tatgttttaagtggtttaacttcagaacaatcatggggtttgttaaagaa---gattgcgtttggggatgataccattggagtgaatcaaactcttgagt |
207 |
Q |
| |
|
||| ||| | |||||| | | |||| || ||| ||||||| ||||| ||| | | ||||||||| |||| | ||||| |||||||| || | |
|
|
| T |
3173490 |
tatactttgaatggtttgaatccagagagttcttggagtttgttgaagaacatcatttcatatggggatgaaaccagaagtgtgaaccaaactctggaat |
3173391 |
T |
|
| Q |
208 |
caattggtaagaagatagtgaaaaagtgcagaggagttccattagcaattagatcattgggaggcatattacgaaataaaagtgaagaaagggaatggat |
307 |
Q |
| |
|
|||||||||| ||||||| | ||||||| || |||||| ||||||| ||| || | |||||| |||||| ||||| ||||| || |||||||| |
|
|
| T |
3173390 |
caattggtaaaaagatagaagagaagtgcattggtgttccactagcaatcagaacactaggaggcctattacagggtaaaactgaagcaaaggaatggac |
3173291 |
T |
|
| Q |
308 |
cgatgtcttacaaggtgaattttggaaattgtgtgaggataacgataccattttgccggtcctaaaattgagttaccaaaatttgtcatttcaacagaga |
407 |
Q |
| |
|
|||||||||||| ||| | |||||||| ||||| || | || | ||| |||| || | ||| ||||||||| ||| |||||| ||||| ||| |
|
|
| T |
3173290 |
tgatgtcttacaatgtggcctgtggaaattatgtgaagacgaagaaagcatcatgccagtgttgaaactgagttacctaaacttgtcacctcaactaaga |
3173191 |
T |
|
| Q |
408 |
caatgttttgcttattgtgctttatatcctaaggattgggtaattgagaaggacgagttgattcaaatgtggatggcgcaaggttatcttgaatgttcaa |
507 |
Q |
| |
|
|||||||||||||| || |||||||||| ||||||||| ||| |||||| | |||||||||||| ||||| |||| |||||||| |||||| |||| |
|
|
| T |
3173190 |
caatgttttgcttactgctctttatatcccaaggattggagaatagagaagcatgagttgattcaactgtgggtggcacaaggttactttgaattttcag |
3173091 |
T |
|
| Q |
508 |
ttgaaaagcactgcatagaagatgttggtaaccaatttgtgaatattttcttgatgaaatcattcttccaag |
579 |
Q |
| |
|
|| |||| | || |||||| ||||||| |||||||| ||||||||||||||||| ||||| ||||||| |
|
|
| T |
3173090 |
gtggaaag---tttatggaagatattggtaa-caatttgtaaatattttcttgatgaagtcatttttccaag |
3173023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 579
Target Start/End: Original strand, 18356082 - 18356660
Alignment:
| Q |
1 |
aaaagttggatcaattgagtacttatttgatgtgtggtgctcaaggccgtaatgttgtagtgacaactcgtagtaaaattgtggcacagataatgggtgt |
100 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||| |||| |||||| ||||||| || ||||| ||||||||| | | |||| |||| |
|
|
| T |
18356082 |
aaaagtgggatcaattgaggccttatttgatgtgtggtgctcaaggcagtaaggttgtaatgacaacacgcagtaagattgtggcagatacaatgagtgt |
18356181 |
T |
|
| Q |
101 |
aagtgaccactatgttttaagtggtttaacttcagaacaatcatggggtttgttaaagaagattgcgtttggggatgataccattggagtgaatcaaact |
200 |
Q |
| |
|
||||||||| ||||||| || ||||||||| ||||| ||||||||| |||||| ||||| ||| | |||||||||| ||| |||||||||| ||| || |
|
|
| T |
18356182 |
aagtgaccaacatgttttgagaggtttaactccagaagaatcatgggttttgttcaagaatattacctttggggatgttactgttggagtgaaccaacct |
18356281 |
T |
|
| Q |
201 |
cttgagtcaattggtaagaagatagtgaaaaagtgcagaggagttccattagcaattagatcattgggaggcatattacgaaataaaagtgaagaaaggg |
300 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||| | ||||||||||||||| | ||||| ||||||| | |
|
|
| T |
18356282 |
cttgaatcaattggtaagaagatagtagaaaagtgcaaaggagttccgttagcaattagatcactaggaggcatattacgaggtgaaagtaaagaaagtg |
18356381 |
T |
|
| Q |
301 |
aatggatcgatgtcttacaaggtgaattttggaaattgtgtgaggataacgataccattttgccggtcctaaaattgagttaccaaaatttgtcatttca |
400 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||| | | ||| ||| ||||||||||||||||||||||||| || || ||| ||| |
|
|
| T |
18356382 |
aatggatcaatgtcttacaaggagaattttggaaattgtgtgatcgtgaaaatagcatcatgccggtcctaaaattgagttaccagaacttatcacctca |
18356481 |
T |
|
| Q |
401 |
acagagacaatgttttgcttattgtgctttatatcctaaggattgggtaattgagaaggacgagttgattcaaatgtggatggcgcaaggttatcttgaa |
500 |
Q |
| |
|
||| || ||||||||||||||||| |||||| |||| ||||||||| | |||||||||| ||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
18356482 |
acaaaggcaatgttttgcttattgctctttatttcctcaggattgggaatttgagaaggatgagttaattcaaatgtggatggcacaaggttatcttggt |
18356581 |
T |
|
| Q |
501 |
tgttcaattgaaaagcactgcatagaagatgttggtaaccaatttgtgaatattttcttgatgaaatcattcttccaag |
579 |
Q |
| |
|
|||||| |||||||||| ||||| ||||||||||||| |||||||| || |||||||||| ||| ||||||||||||| |
|
|
| T |
18356582 |
tgttcagttgaaaagcaatgcatgaaagatgttggtaatcaatttgtaaaaattttcttgaagaattcattcttccaag |
18356660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 21 - 579
Target Start/End: Complemental strand, 10755405 - 10754844
Alignment:
| Q |
21 |
acttatttgatgtgtggtgctcaaggccgtaatgttgtagtgacaactcgtagtaaaattgtggcacagataatgggtgtaagtgaccactatgttttaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||| |||| |||||||| | |||| ||||| ||||| ||| ||||| |
|
|
| T |
10755405 |
acttatttgatgtgtggtgctcaaggcagtaaggttgtagtgacaactcgtgagaaaaccgtggcacacacaatgcgtgtagatgacccttatactttaa |
10755306 |
T |
|
| Q |
121 |
gtggtttaacttcagaacaatcatggggtttgttaaagaagattgcgtttggggatgataccattggagtg---aatcaaactcttgagtcaattggtaa |
217 |
Q |
| |
|
||||| ||||||||| |||| ||||||||||| |||||||||| |||||||||||| || ||||||| || || |||||| ||||| ||||| |
|
|
| T |
10755305 |
aaggtttgacttcagaagaatcttggggtttgttgaagaagattgtctttggggatgattccgttggagtagtaaaccaggatcttgaatcaataggtaa |
10755206 |
T |
|
| Q |
218 |
gaagatagtgaaaaagtgcagaggagttccattagcaattagatcattgggaggcatattacgaaataaaagtgaagaaagggaatggatcgatgtctta |
317 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||| ||||||| |||||| ||||||| | ||||||| |
|
|
| T |
10755205 |
gaagatagcgaaaaagtgcaaaggagtaccattggcaattagatcattgggaggcatattacgaagtaaaagtaaagaaattgaatggaacaatgtcttg |
10755106 |
T |
|
| Q |
318 |
caaggtgaattttggaaattgtgtgaggataacgataccattttgccggtcctaaaattgagttaccaaaatttgtcatttcaacagagacaatgttttg |
417 |
Q |
| |
|
|||||||| || |||| ||| || || ||| | ||| ||| ||||||||||||||||||||||||| || |||||| |||||| || ||||||||| |
|
|
| T |
10755105 |
caaggtgacttatggagattatgcgaagatgaaaatagcatcatgccggtcctaaaattgagttaccataacttgtcacctcaacaaagggaatgttttg |
10755006 |
T |
|
| Q |
418 |
cttattgtgctttatatcctaaggattgggtaattgagaaggacgagttgattcaaatgtggatggcgcaaggttatcttgaatgttcaattgaaaagca |
517 |
Q |
| |
|
||||||| |||||| |||||||||||||| | |||||||||| ||||| ||||||||||||||||| ||||||||||||| |||||| |||| | | |
|
|
| T |
10755005 |
cttattgctctttatttcctaaggattgggaatttgagaaggatgagttaattcaaatgtggatggcacaaggttatcttggttgttcagttgaggggaa |
10754906 |
T |
|
| Q |
518 |
ctgcatagaagatgttggtaaccaatttgtgaatattttcttgatgaaatcattcttccaag |
579 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||||||||||| ||| ||||||||||||| |
|
|
| T |
10754905 |
atgcatggaagatgttggtaatcaatttgtaaatattttcttgacgaattcattcttccaag |
10754844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 152; Significance: 3e-80; HSPs: 2)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 579
Target Start/End: Original strand, 45807 - 46388
Alignment:
| Q |
1 |
aaaagttggatcaattgagtacttatttgatgtgtggtgctcaaggccgtaatgttgtagtgacaactcgtagtaaaattgtggcacagataatgggtgt |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| |||||| ||||||||||||||| | ||||||||| |
|
|
| T |
45807 |
aaaagtgggatcaattgaagacttatttgatgtgtggtgctcaaggtagtaaggttgtagtgacgactcgttctaaaattgtggcacaaacaatgggtgt |
45906 |
T |
|
| Q |
101 |
aagtgaccactatgttttaagtggtttaacttcagaacaatcatggggtttgttaaagaagattgcgtttggggatgataccattggag---tgaatcaa |
197 |
Q |
| |
|
||||| || |||| ||| | |||||| ||| |||| |||| ||| ||||||| ||||| || | | ||||||| |||| |||| |||| ||| |
|
|
| T |
45907 |
aagtgtcccctatactttgaatggtttgactccagagaaatcttggtgtttgttgaagaacatcacatacagggatgagaccaaaggagttttgaaccaa |
46006 |
T |
|
| Q |
198 |
actcttgagtcaattggtaagaagatagtgaaaaagtgcagaggagttccattagcaattagatcattgggaggcatattacgaaataaaagtgaagaaa |
297 |
Q |
| |
|
| |||||| |||||||||||||||||| |||||||||| || |||||| ||||||| ||| |||| |||||| | |||| | |||||||||||||| |
|
|
| T |
46007 |
aatcttgaagcaattggtaagaagatagctgaaaagtgcagtggtgttccactagcaatcagaacattaggaggccttttacaaggtaaaagtgaagaaa |
46106 |
T |
|
| Q |
298 |
gggaatggatcgatgtcttacaaggtgaattttggaaattgtgtgaggataacgataccattttgccggtcctaaaattgagttaccaaaatttgtcatt |
397 |
Q |
| |
|
||||||| | | ||| ||||||| ||| ||||||||||| ||||| || | || ||||| |||| || | ||| ||||||||||||| || || |
|
|
| T |
46107 |
cggaatgggttggtgttttacaagatgacttttggaaattatgtgaagacgaagaaaccatcatgccagtgttgaaactgagttaccaaaacttatcgcc |
46206 |
T |
|
| Q |
398 |
tcaacagagacaatgttttgcttattgtgctttatatcctaaggattgggtaattgagaaggacgagttgattcaaatgtggatggcgcaaggttatctt |
497 |
Q |
| |
|
||||| |||||||||||| |||| || ||||||||||||||||||||| ||| | ||||| |||||||||||| |||||||||| |||||||||||| |
|
|
| T |
46207 |
tcaactaagacaatgtttttcttactgctctttatatcctaaggattgggaaataaaaaaggatgagttgattcaactgtggatggcacaaggttatctt |
46306 |
T |
|
| Q |
498 |
gaatgttcaattgaaaagcactgcatagaagatgttggtaaccaatttgtgaatattttcttgatgaaatcattcttccaag |
579 |
Q |
| |
|
|||||||||| | |||| || | |||||| ||||||||||||| || || |||||||||||||| ||||||||||||| |
|
|
| T |
46307 |
gaatgttcaactcaaaaacagggtccggaagatattggtaaccaattcgtaaagattttcttgatgaagtcattcttccaag |
46388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 11 - 336
Target Start/End: Original strand, 50983 - 51312
Alignment:
| Q |
11 |
tcaattgagtacttatttgatgtgtggtgctcaaggccgtaatgttgtagtgacaactcgtagtaaaattgtggcacagataatgggtgtaagtgaccac |
110 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||| |||| ||||||||||| |||||| ||||||||||||||| | ||||| ||||||| || | |
|
|
| T |
50983 |
tcaattgaggacttattttatgtgtggtgctcaaggtagtaaggttgtagtgacgactcgttctaaaattgtggcacaaacaatggatgtaagtatcccc |
51082 |
T |
|
| Q |
111 |
tatgttttaagtggtttaacttcagaacaatcatggggtttgttaaagaa----gattgcgtttggggatgataccattggagtgaatcaaactcttgag |
206 |
Q |
| |
|
|||| ||| | |||||| |||||||| |||| ||||||||||| ||||| ||| | | ||||||||| |||| | |||||| |||||||| || |
|
|
| T |
51083 |
tatgctttgaatggtttgacttcagagaaatcttggggtttgttgaagaacattcattacatatggggatgagaccaaagtagtgaaccaaactctggaa |
51182 |
T |
|
| Q |
207 |
tcaattggtaagaagatagtgaaaaagtgcagaggagttccattagcaattagatcattgggaggcatattacgaaataaaagtgaagaaagggaatgga |
306 |
Q |
| |
|
||||||||||||| ||||| ||||||| || || ||||||||||||| ||| || | ||||| || |||| | ||||| |||||||| ||||||| |
|
|
| T |
51183 |
acaattggtaagaatatagttgaaaagtgtagtggtgttccattagcaaaaagaacactaggagggatgttacaaggtaaaattgaagaaaaagaatgga |
51282 |
T |
|
| Q |
307 |
tcgatgtcttacaaggtgaattttggaaat |
336 |
Q |
| |
|
| ||||| ||||| ||||| |||||||||| |
|
|
| T |
51283 |
ttgatgttttacagggtgacttttggaaat |
51312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 6e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 15 - 507
Target Start/End: Complemental strand, 3918903 - 3918408
Alignment:
| Q |
15 |
ttgagtacttatttgatgtgtggtgctcaaggccgtaatgttgtagtgacaactcgtagtaaaattgtggcacagataatgggtgtaagtgaccactatg |
114 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| |||| |||||| |||||| |||||||||| ||| |||| | ||||||||||| ||||| ||||| |
|
|
| T |
3918903 |
ttgaggacttttttgatgtgtggtgctcaaggtagtaagattgtagcgacaacccgtagtaaaacagtgtcacaaacaatgggtgtaattgacccctatg |
3918804 |
T |
|
| Q |
115 |
ttttaagtggtttaacttcagaacaatcatggggtttgttaaagaagat---tgcgtttggggatgataccattggagtgaatcaaactcttgagtcaat |
211 |
Q |
| |
|
|||| | |||||| ||| ||| | |||| ||| ||||||| || || || | | | |||||||| ||| ||||||| ||||||||||| ||||| |
|
|
| T |
3918803 |
ttttgaatggtttgactccagcagaatcttggcgtttgttgaacaacatcattacatacggggatgagtccaaaagagtgaaccaaactcttgaatcaat |
3918704 |
T |
|
| Q |
212 |
tggtaagaagatagtgaaaaagtgcagaggagttccattagcaattagatcattgggaggcatattacgaaataaaagtgaagaaagggaatggatcgat |
311 |
Q |
| |
|
|| |||||||||| ||||||||| || |||||| ||||||| ||| || | |||||| | |||| | ||||||||||||| | |||||||| ||| |
|
|
| T |
3918703 |
cggcaagaagatagcagaaaagtgcactggggttccactagcaataagaacactaggaggcctgttacaaggtaaaagtgaagaatgtgaatggattgat |
3918604 |
T |
|
| Q |
312 |
gtcttacaaggtgaattttggaaattgtgtgaggataacgataccattttgccggtcctaaaattgagttaccaaaatttgtcatttcaacagagacaat |
411 |
Q |
| |
|
|| ||||||||||| ||||||||||| ||||| ||| | || | || |||| || | ||| ||||||||||||| ||||| ||||| | |||||| |
|
|
| T |
3918603 |
gttttacaaggtgacttttggaaattatgtgaagatgaagaaagtatcatgccagtgttgaaactgagttaccaaaacttgtcgcctcaactgcgacaat |
3918504 |
T |
|
| Q |
412 |
gttttgcttattgtgctttatatcctaaggattgggtaattgagaaggacgagttgattcaaatgtggatggcgcaaggttatcttgaatgttcaa |
507 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| || |||||||| || ||||| ||| |||||||||| || ||||||||||||||||||| |
|
|
| T |
3918503 |
gttttgcttattgctctttatatcctaaggattgggatatagagaaggatgaattgatacaattgtggatggcacatggttatcttgaatgttcaa |
3918408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 421
Target Start/End: Original strand, 7157284 - 7157421
Alignment:
| Q |
284 |
taaaagtgaagaaagggaatggatcgatgtcttacaaggtgaattttggaaattgtgtgaggataacgataccattttgccggtcctaaaattgagttac |
383 |
Q |
| |
|
|||||||||||| | ||||||||| ||||| ||||||||||| ||||||||||| ||||| || | |||| |||| |||| || | ||| |||||||| |
|
|
| T |
7157284 |
taaaagtgaagagaaggaatggatggatgttttacaaggtgacttttggaaattatgtgaagacgaagatagcattatgccagtgttgaaactgagttac |
7157383 |
T |
|
| Q |
384 |
caaaatttgtcatttcaacagagacaatgttttgctta |
421 |
Q |
| |
|
|||| ||||| |||| |||||||||||||||||| |
|
|
| T |
7157384 |
caaagcttgtctcctcaaatgagacaatgttttgctta |
7157421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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