View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_72 (Length: 386)

Name: NF7850A_low_72
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_72
NF7850A_low_72
[»] chr8 (16 HSPs)
chr8 (21-385)||(12139324-12139688)
chr8 (250-377)||(12028838-12028964)
chr8 (21-187)||(12059059-12059222)
chr8 (72-189)||(12040662-12040779)
chr8 (229-307)||(12040585-12040663)
chr8 (269-328)||(12031642-12031701)
chr8 (269-328)||(12052793-12052852)
chr8 (269-328)||(15978315-15978374)
chr8 (269-328)||(12059641-12059700)
chr8 (269-328)||(19109867-19109926)
chr8 (243-311)||(12031580-12031648)
chr8 (269-328)||(19123881-19123940)
chr8 (283-328)||(19144888-19144933)
chr8 (243-311)||(19109920-19109988)
chr8 (264-308)||(19123955-19123999)
chr8 (264-308)||(19144948-19144992)


Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 21 - 385
Target Start/End: Original strand, 12139324 - 12139688
Alignment:
Q  21 atcacttgactgtgtcgtatttttctgttgcagtcttactgttgtccagataccgagcagtactacaacacatatcgcaggctcatacggtatgtaagct 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12139324 atcacttgactgtgtcgtatttttctgttgcagtcttactgttgtccagataccgagcagtactacaacacatatcgcaggctaatacggtatgtaagct 12139423  T
Q  121 atgctaagaaaaaccaacttggaccctacgaaccggtgagttgaatttcattttccctgaatcatcacaacaactgaatgtgttgttcttaacagaacca 220  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   ||    
T  12139424 atgctaagaaaaaccaagttggaccctacgaaccggtgagttgaatttcattttccctgaatcatcacaacaacttaatgtgttgttcttaacaggcaca 12139523  T
Q  221 ggttttcccatcaattttgtgaaagtttgttgcattttggacatgtaaaattttaaatgtgtttcatggaagtatcaaatggttttgttgactgctttat 320  Q
    || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12139524 ggatttcccatcaattttgtgaaagtttcttgcattttggacatgtaaaattttaaatgtgtttcatggaagtatcaaatggttttgttgactgctttat 12139623  T
Q  321 taagtttcaatgtcgttactgacactgtactgctggagatgaagagtgcgacaaattcctggaac 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12139624 taagtttcaatgtcgttactgacactgtactgctggagatgaagagtgcgacaaattcctggaac 12139688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 250 - 377
Target Start/End: Complemental strand, 12028964 - 12028838
Alignment:
Q  250 ttgcattttggacatgtaaaattttaaatgtgtttcatggaagtatcaaatggttttgttgactgctttattaagtttcaatgtcgttactgacactgta 349  Q
    ||||||||| ||||||||| |||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||    
T  12028964 ttgcattttagacatgtaatattttatacatgtttcatggaagtatcaaatggttttgttgactgctttattaagtttcaatgtggttactgacac-ata 12028866  T
Q  350 ctgctggagatgaagagtgcgacaaatt 377  Q
    |||||||||| |||||||||||||||||    
T  12028865 ctgctggagacgaagagtgcgacaaatt 12028838  T

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Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 12059222 - 12059059
Alignment:
Q  21 atcacttgactgtgtcgtatttttctgttgcagtcttactgttgtccagataccgagcagtactacaacacatatcgcaggctcatacggtatgtaagct 120  Q
    ||||||||||||||| ||| ||||||||||| |||||||| |||||||||||||||||   | | ||||||||| |||||||||||||||||||||| ||    
T  12059222 atcacttgactgtgttgtaattttctgttgcggtcttactattgtccagataccgagc---aattcaacacataacgcaggctcatacggtatgtaaact 12059126  T
Q  121 atgctaagaaaaaccaacttggaccctacgaaccggtgagttgaatttcattttccctgaatcatca 187  Q
    |||||||||||||||   ||||  ||| || ||||||||||||||||||||||| ||| ||||||||    
T  12059125 atgctaagaaaaacctggttggtgcctgcggaccggtgagttgaatttcatttttcctaaatcatca 12059059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 72 - 189
Target Start/End: Complemental strand, 12040779 - 12040662
Alignment:
Q  72 accgagcagtactacaacacatatcgcaggctcatacggtatgtaagctatgctaagaaaaaccaacttggaccctacgaaccggtgagttgaatttcat 171  Q
    |||||||| || | |||||||||||||||| ||||||||||||||| |||||||||||||||||   |||   |||| | ||||||||||||||||||||    
T  12040779 accgagcattatttcaacacatatcgcaggatcatacggtatgtaaactatgctaagaaaaaccgggttgatgcctatggaccggtgagttgaatttcat 12040680  T
Q  172 tttccctgaatcatcaca 189  Q
    ||| ||||||||||||||    
T  12040679 ttttcctgaatcatcaca 12040662  T

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Target: chr8; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 229 - 307
Target Start/End: Complemental strand, 12040663 - 12040585
Alignment:
Q  229 catcaattttgtgaaagtttgttgcattttggacatgtaaaattttaaatgtgtttcatggaagtatcaaatggttttg 307  Q
    |||||||||||||||||||| ||||||||||||||| |||  |||||||||||||||||| ||||||||||||||||||    
T  12040663 catcaattttgtgaaagtttcttgcattttggacatataatcttttaaatgtgtttcatgtaagtatcaaatggttttg 12040585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 328
Target Start/End: Complemental strand, 12031701 - 12031642
Alignment:
Q  269 aattttaaatgtgtttcatggaagtatcaaatggttttgttgactgctttattaagtttc 328  Q
    |||| ||||| |||||||||||||||| |||| |||||||||| ||||||||||||||||    
T  12031701 aattataaatatgtttcatggaagtattaaattgttttgttgaatgctttattaagtttc 12031642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 328
Target Start/End: Complemental strand, 12052852 - 12052793
Alignment:
Q  269 aattttaaatgtgtttcatggaagtatcaaatggttttgttgactgctttattaagtttc 328  Q
    |||| ||||| |||||||||||||||| |||| |||||||||| ||||||||||||||||    
T  12052852 aattataaatatgtttcatggaagtattaaattgttttgttgaatgctttattaagtttc 12052793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 328
Target Start/End: Original strand, 15978315 - 15978374
Alignment:
Q  269 aattttaaatgtgtttcatggaagtatcaaatggttttgttgactgctttattaagtttc 328  Q
    |||| ||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||||    
T  15978315 aattataaatatgtttcattgaagtattaaatggttttgttgaatgctttattaagtttc 15978374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 328
Target Start/End: Complemental strand, 12059700 - 12059641
Alignment:
Q  269 aattttaaatgtgtttcatggaagtatcaaatggttttgttgactgctttattaagtttc 328  Q
    |||| ||||| |||||||||||||||| | ||||||||||||| || |||||||||||||    
T  12059700 aattataaatatgtttcatggaagtattatatggttttgttgaatggtttattaagtttc 12059641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 328
Target Start/End: Original strand, 19109867 - 19109926
Alignment:
Q  269 aattttaaatgtgtttcatggaagtatcaaatggttttgttgactgctttattaagtttc 328  Q
    |||| ||||| |||||||| ||||||| || |||||||||||| ||||||||||||||||    
T  19109867 aattataaatatgtttcattgaagtattaagtggttttgttgaatgctttattaagtttc 19109926  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 12031648 - 12031580
Alignment:
Q  243 aagtttgttgcattttggacatgtaaaattttaaatgtgtttcatggaagtatcaaatggttttgttga 311  Q
    |||||| |||||||  ||| |||||| ||||||||| | |||||||||||||| ||||| |||||||||    
T  12031648 aagtttcttgcattcaggatatgtaatattttaaatatatttcatggaagtattaaatgattttgttga 12031580  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 328
Target Start/End: Original strand, 19123881 - 19123940
Alignment:
Q  269 aattttaaatgtgtttcatggaagtatcaaatggttttgttgactgctttattaagtttc 328  Q
    |||| ||||| || ||||| ||||||| ||||||||||||||| |||||||||| |||||    
T  19123881 aattataaatatgattcattgaagtattaaatggttttgttgaatgctttattatgtttc 19123940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 328
Target Start/End: Original strand, 19144888 - 19144933
Alignment:
Q  283 ttcatggaagtatcaaatggttttgttgactgctttattaagtttc 328  Q
    ||||| ||||||| ||||||||||||||| |||||||||| |||||    
T  19144888 ttcattgaagtattaaatggttttgttgaatgctttattatgtttc 19144933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 19109920 - 19109988
Alignment:
Q  243 aagtttgttgcattttggacatgtaaaattttaaatgtgtttcatggaagtatcaaatggttttgttga 311  Q
    |||||| |||||||  |||  ||||| ||||||||||| ||||||| ||||||||| || |||||||||    
T  19109920 aagtttcttgcattcaggatgtgtaatattttaaatgtatttcatgaaagtatcaattgattttgttga 19109988  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 308
Target Start/End: Original strand, 19123955 - 19123999
Alignment:
Q  264 tgtaaaattttaaatgtgtttcatggaagtatcaaatggttttgt 308  Q
    ||||| ||||||||| | |||||||||||||||||||| ||||||    
T  19123955 tgtaatattttaaatatatttcatggaagtatcaaatgattttgt 19123999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 308
Target Start/End: Original strand, 19144948 - 19144992
Alignment:
Q  264 tgtaaaattttaaatgtgtttcatggaagtatcaaatggttttgt 308  Q
    ||||| ||||||||| | |||||||||||||||||||| ||||||    
T  19144948 tgtaatattttaaatatatttcatggaagtatcaaatgattttgt 19144992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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