View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_74 (Length: 384)

Name: NF7850A_low_74
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_74
NF7850A_low_74
[»] chr8 (4 HSPs)
chr8 (11-285)||(32848022-32848279)
chr8 (198-377)||(11364555-11364737)
chr8 (116-348)||(9617871-9618111)
chr8 (341-377)||(32847989-32848025)
[»] chr5 (2 HSPs)
chr5 (116-377)||(34272244-34272507)
chr5 (146-212)||(15027035-15027100)
[»] chr7 (6 HSPs)
chr7 (196-364)||(29367291-29367463)
chr7 (116-346)||(39773170-39773403)
chr7 (151-343)||(32471143-32471344)
chr7 (200-347)||(42863670-42863821)
chr7 (293-348)||(29346783-29346838)
chr7 (133-265)||(35199381-35199515)
[»] chr3 (5 HSPs)
chr3 (176-291)||(531151-531268)
chr3 (176-291)||(564106-564223)
chr3 (321-378)||(564224-564281)
chr3 (321-378)||(531269-531326)
chr3 (194-287)||(46505965-46506057)
[»] chr2 (3 HSPs)
chr2 (117-233)||(5699923-5700039)
chr2 (116-266)||(31380499-31380650)
chr2 (171-235)||(13266812-13266876)
[»] chr4 (3 HSPs)
chr4 (113-274)||(45610537-45610699)
chr4 (146-347)||(4848726-4848930)
chr4 (303-345)||(49272661-49272703)
[»] chr6 (3 HSPs)
chr6 (114-230)||(6919321-6919437)
chr6 (123-377)||(29181491-29181751)
chr6 (241-291)||(15091898-15091948)
[»] chr1 (5 HSPs)
chr1 (234-364)||(29274555-29274690)
chr1 (152-266)||(49138095-49138208)
chr1 (155-252)||(4625300-4625396)
chr1 (303-346)||(12900877-12900920)
chr1 (118-179)||(13399978-13400039)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 32848279 - 32848022
Alignment:
Q  11 gcactaggatgagctcccttgcgtacgttgcaccggcatgtttaacttgcacacggtagaggccgcctcgaaacaataccaacttcgtcaattgagatat 110  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
T  32848279 gcactaggatgagctcccttgcgtacattgcaccggcatgtttaacttgcacacggtagaggccgcctcgaaacaataccaacttcgt------------ 32848192  T
Q  111 atttttgttatgattcaaattggcatataaaaaattacatttggcataacatcattggttgagataaatgaacatgtggctcatgatcctaaaatcaagg 210  Q
         |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32848191 -----tgttatgattcaaatttgcatataaaaaattacatttggcataacatcattggttgaggtaaatgaacatgtggctcatgatcctaaaatcaagg 32848097  T
Q  211 aagttttgattgtgcataaatagagaattgatgatcaataatgggtatgaagaaaactgatgaactctctcatct 285  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||    
T  32848096 aagtttggattgtgcataaatagagaaatgatgatcaataatgggtatcaagaaaattgatgaactctctcatct 32848022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 198 - 377
Target Start/End: Complemental strand, 11364737 - 11364555
Alignment:
Q  198 cctaaaatcaaggaagttttgattgtgcataaatagagaattgatgatcaataatgggtatgaagaaaactgatgaactctctcatctctccctc---ac 294  Q
    |||||||| ||||||| || |||||||||||||||||||| ||||||||| ||| |||||||||||||| |||   | | |||| |||| || |    ||    
T  11364737 cctaaaattaaggaagcttggattgtgcataaatagagaaatgatgatcactaaggggtatgaagaaaaatgacatagtatctcctctcccctttggtac 11364638  T
Q  295 tctcttgaagagtaatggcttaagtctttggacttagtcttcttctatcttttcctatctcttttatgtattaagaacaccaa 377  Q
    ||||  | ||||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||||| ||||||||||||    
T  11364637 tctcaagtagagtaatggcttaagtctttcgacttggtcttcttctatcttttcctttcccttttatgtactaagaacaccaa 11364555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 116 - 348
Target Start/End: Complemental strand, 9618111 - 9617871
Alignment:
Q  116 tgttatgattcaaattggcatataaaaaattacatttggcataacatcattggttgagataaatgaacatgtggctcatgatcctaaaatcaaggaagtt 215  Q
    |||||||||  ||| | |||||| || || |||||||| |||| ||| ||||||||||  ||| | | ||||||||  |||||||| |||||| ||||||    
T  9618111 tgttatgatctaaaatagcatatgaagaaatacatttgacatatcataattggttgaggcaaagggagatgtggctagtgatcctagaatcaatgaagtt 9618012  T
Q  216 ttgattgtgcataaatagagaattgatgatcaataatgggtatgaagaaaactgatgaactctctcatctctccct----cactctcttgaa----gagt 307  Q
    | ||||||||||||| ||  ||  ||||| ||| |||  |||||||||||| ||| ||| ||| || ||||| |||     ||||||| | |    ||||    
T  9618011 tggattgtgcataaacaggaaaaggatgaacaacaataagtatgaagaaaaatgaagaagtctttcctctcttcctgtggtactctctagtatagggagt 9617912  T
Q  308 aatggcttaagtctttggacttagtcttcttctatcttttc 348  Q
    |||| ||||||| |||| | |||||||||||||||||||||    
T  9617911 aatgacttaagtttttgtatttagtcttcttctatcttttc 9617871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 341 - 377
Target Start/End: Complemental strand, 32848025 - 32847989
Alignment:
Q  341 atcttttcctatctcttttatgtattaagaacaccaa 377  Q
    |||||||||||||||||||||||||||||||||||||    
T  32848025 atcttttcctatctcttttatgtattaagaacaccaa 32847989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 116 - 377
Target Start/End: Original strand, 34272244 - 34272507
Alignment:
Q  116 tgttatgattcaaattggcatataaaaaattacatttggcataacatcattggttgagataaatgaacatgtggctcatgatcctaaaatcaaggaagtt 215  Q
    |||||||||||||| | |||||| | ||| ||||||||||||||||| ||||||| || |||||| ||||||| ||  |||||||||||||||||| | |    
T  34272244 tgttatgattcaaaatagcatatgagaaaatacatttggcataacataattggtttaggtaaatggacatgtgactagtgatcctaaaatcaaggatgct 34272343  T
Q  216 ttgattgtgcataaatagagaattgatgatcaataatgggtatgaagaaaactgatgaa-ctctctcatctctccct----cactctcttgaagagtaat 310  Q
    | ||||||||||||||||| || |||| |  |||||||||||||||||||| |||||||  | |||| ||||||| |     ||||||| ||||||||||    
T  34272344 tagattgtgcataaatagaaaaatgataaataataatgggtatgaagaaaattgatgaatttttctc-tctctccatttagtactctctagaagagtaat 34272442  T
Q  311 ggcttaagtctttggacttagtcttcttctatcttttcctatctcttttatgtattaagaacaccaa 377  Q
    | ||||||||||| |||||||||||||| ||| ||| ||| ||| |||||| | |||||||||||||    
T  34272443 gacttaagtcttt-gacttagtcttcttttatatttccctttct-ttttatcttttaagaacaccaa 34272507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 15027100 - 15027035
Alignment:
Q  146 tacatttggcataacatcattggttgagataaatgaacatgtggctcatgatcctaaaatcaaggaa 212  Q
    ||||||||||||||||| |||||||||| ||||||| ||   ||||  |||||||||||||||||||    
T  15027100 tacatttggcataacataattggttgaggtaaatga-cactcggctagtgatcctaaaatcaaggaa 15027035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 196 - 364
Target Start/End: Complemental strand, 29367463 - 29367291
Alignment:
Q  196 atcctaaaatcaaggaagttttgattgtgcataaatagagaattgatgatcaataatgggtatgaagaaaactgatgaactctctcatctctccctc--- 292  Q
    |||||||||| || ||| ||| | || | ||||||||| ||| |||||||||| | ||||||||||||||| ||||||| ||| ||||||||| ||        
T  29367463 atcctaaaattaaagaactttgggttatacataaatagtgaaatgatgatcaacagtgggtatgaagaaaagtgatgaagtctatcatctctctctttaa 29367364  T
Q  293 -actctcttgaagagtaatggcttaagtctttggacttagtcttcttctatcttttcctatctcttttatgta 364  Q
     ||||||| | ||||||||| |||||||||| |||||||||||||||||||| ||  || |||||||||||||    
T  29367363 tactctctagtagagtaatgacttaagtcttaggacttagtcttcttctatccttctctttctcttttatgta 29367291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 116 - 346
Target Start/End: Original strand, 39773170 - 39773403
Alignment:
Q  116 tgttatgattcaaattggcatataaaaaattacatttggcataacatcattggttgagataaatgaacatgtggctcatgatcctaaaatcaaggaagtt 215  Q
    |||||||||||||| || |||||||  |||||||  ||||||||||| ||||||||||| ||||| ||||||||||  |||||||||||| ||||||| |    
T  39773170 tgttatgattcaaaatgacatataaggaattacacatggcataacataattggttgagaaaaatggacatgtggctagtgatcctaaaattaaggaagct 39773269  T
Q  216 ttgattgtgcataaatagagaattgatgatcaataatgggtatgaagaaaactgatgaactctctcatctctccct----cactctcttgaagagtaatg 311  Q
    |  |||||  |||| ||| ||| |||   ||| | |||||||||||||| | ||| |||   |||| | |||||||     |||||| |  |||||||||    
T  39773270 tgaattgtatataattagtgaaatgactttcattgatgggtatgaagaatattgaagaaaagtctc-tttctccctttggtactctccttgagagtaatg 39773368  T
Q  312 gcttaagtctttggacttagtcttcttctatcttt 346  Q
    ||||| |||||| |||| |||||||||||||||||    
T  39773369 gcttaggtctttagactaagtcttcttctatcttt 39773403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 151 - 343
Target Start/End: Complemental strand, 32471344 - 32471143
Alignment:
Q  151 ttggcataacatcattggttgagataaatgaacatgtggctcatgatcctaaaatcaaggaagttttgattgtgcataaatagagaattgatgatcaata 250  Q
    ||||||||| || ||||||||||  ||||| |||||| | |  |||||||||||||||||||| || |||||||||||||||||||| ||||||||| |     
T  32471344 ttggcataatattattggttgaggcaaatggacatgtagttagtgatcctaaaatcaaggaagcttggattgtgcataaatagagaaatgatgatcactg 32471245  T
Q  251 a-----tgggtatgaagaaaactgatgaactctctcatctctccct----cactctcttgaagagtaatggcttaagtctttggacttagtcttcttcta 341  Q
    |      || ||||||||||| ||||||| |||||| |||||||||     |||||| |   |||||||  |||| ||||||| ||||||||||||||||    
T  32471244 agggccgggttatgaagaaaattgatgaagtctctcctctctccctttggtactctccttgcgagtaataacttatgtctttgaacttagtcttcttcta 32471145  T
Q  342 tc 343  Q
    ||    
T  32471144 tc 32471143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 347
Target Start/End: Original strand, 42863670 - 42863821
Alignment:
Q  200 taaaatcaaggaagttttgattgtgcataaatagagaattgatgatcaataatgggtatgaagaaaactgatgaactctctcatctctccct----cact 295  Q
    |||||| ||||||| || |||||||||||||||||| | ||||| ||| |||  ||||||||||||| |||  || |||||| ||||||| |    ||||    
T  42863670 taaaattaaggaagcttagattgtgcataaatagaggaatgatggtcactaagaggtatgaagaaaaatgaccaagtctctcttctctccttttgacact 42863769  T
Q  296 ctcttgaagagtaatggcttaagtctttggacttagtcttcttctatctttt 347  Q
    |  | | ||||||||| |||||||||| |||||  |||||||||||||||||    
T  42863770 cattggtagagtaatgacttaagtcttaggactaggtcttcttctatctttt 42863821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 348
Target Start/End: Complemental strand, 29346838 - 29346783
Alignment:
Q  293 actctcttgaagagtaatggcttaagtctttggacttagtcttcttctatcttttc 348  Q
    ||||||||  || |||||| |||||||||||||||| |||||||||||||||||||    
T  29346838 actctctttgagggtaatgacttaagtctttggactaagtcttcttctatcttttc 29346783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 265
Target Start/End: Complemental strand, 35199515 - 35199381
Alignment:
Q  133 gcatataaaaaattacatttggcataacatcattggttgagataaatg--aacatgtggctcatgatcctaaaatcaaggaagttttgattgtgcataaa 230  Q
    |||||||| ||| || |||||||||||||  |||| |||||  ||||   |||||||||||  ||||| |||||  |||||| ||| | |||||||||||    
T  35199515 gcatataagaaaatatatttggcataacaaaattgtttgaggcaaattttaacatgtggctagtgatcttaaaactaaggaaatttgggttgtgcataaa 35199416  T
Q  231 tagagaattgatgatcaataatgggtatgaagaaa 265  Q
    || |||| | |||||||||||| | ||||||||||    
T  35199415 taaagaaattatgatcaataattgatatgaagaaa 35199381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 176 - 291
Target Start/End: Original strand, 531151 - 531268
Alignment:
Q  176 aaatgaacatgtggctcatgatcctaaaatcaaggaagttttgattgtgcataaatagag--aattgatgatcaataatgggtatgaagaaaactgatga 273  Q
    ||||| ||||| |||| | ||||||||||||||||||| || || |||||||| | ||||  || |||||||| ||||||||||||||||||| ||||||    
T  531151 aaatggacatgcggctaacgatcctaaaatcaaggaagcttggaatgtgcatataaagaggaaaatgatgatcgataatgggtatgaagaaaattgatga 531250  T
Q  274 actctctcatctctccct 291  Q
    | |||||| |||||||||    
T  531251 agtctctcctctctccct 531268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 176 - 291
Target Start/End: Original strand, 564106 - 564223
Alignment:
Q  176 aaatgaacatgtggctcatgatcctaaaatcaaggaagttttgattgtgcataaatagag--aattgatgatcaataatgggtatgaagaaaactgatga 273  Q
    ||||| ||||| |||| | ||||||||||||||||||| || || |||||||| | ||||  || |||||||| ||||||||||||||||||| ||||||    
T  564106 aaatggacatgcggctaacgatcctaaaatcaaggaagcttggaatgtgcatataaagaggaaaatgatgatcgataatgggtatgaagaaaattgatga 564205  T
Q  274 actctctcatctctccct 291  Q
    | |||||| |||||||||    
T  564206 agtctctcctctctccct 564223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 564224 - 564281
Alignment:
Q  321 tttggacttagtcttcttctatcttttcctatctcttttatgtattaagaacaccaaa 378  Q
    ||||||||| |||||||||||||||||||| ||||||||||| | |||||||||||||    
T  564224 tttggacttggtcttcttctatcttttcctttctcttttatgcactaagaacaccaaa 564281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 531269 - 531326
Alignment:
Q  321 tttggacttagtcttcttctatcttttcctatctcttttatgtattaagaacaccaaa 378  Q
    ||||||||| |||||||||||||||||||| |||||||||| || |||| ||||||||    
T  531269 tttggacttggtcttcttctatcttttcctttctcttttatctactaaggacaccaaa 531326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 287
Target Start/End: Original strand, 46505965 - 46506057
Alignment:
Q  194 tgatcctaaaatcaaggaagttttgattgtgcataaatagagaattgatgatcaataatgggtatgaagaaaactgatgaactctctcatctct 287  Q
    |||||||||||| ||||||  || ||| |||||||||||| |||  || |||||||| ||||| ||||||| | ||||||| |||||| |||||    
T  46505965 tgatcctaaaataaaggaaccttggat-gtgcataaatagtgaaaggaggatcaatagtgggtgtgaagaatattgatgaagtctctcctctct 46506057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 5699923 - 5700039
Alignment:
Q  117 gttatgattcaaattggcatataaaaaattacatttggcataacatcattggttgagataaatgaacatgtggctcatgatcctaaaatcaaggaagttt 216  Q
    ||||||||||||| | |||||| |  || |||| |||||||||||| ||||||| || |||||||||| ||| ||  |||||||||||||||||||||||    
T  5699923 gttatgattcaaaatagcatattaggaaatacacttggcataacataattggttaaggtaaatgaacacgtgactagtgatcctaaaatcaaggaagttt 5700022  T
Q  217 tgattgtgcataaatag 233  Q
     |  |||||||||||||    
T  5700023 gggctgtgcataaatag 5700039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 266
Target Start/End: Original strand, 31380499 - 31380650
Alignment:
Q  116 tgttatgattcaaattggcatataaaaaattacatttggcataacatcattgg--ttgagataaatgaacatgtggctcatgatcctaaaatcaaggaag 213  Q
    |||||||||||||| | ||||||    || |||| || ||||||||| |||||  |||| ||||||| ||| |||||| || ||||||||||||| |||     
T  31380499 tgttatgattcaaagtagcatatgtggaaatacacttagcataacataattggggttgatataaatggacacgtggctaatcatcctaaaatcaatgaac 31380598  T
Q  214 ttttgattgtgcataaatagagaattgatgatcaataatgggtatgaagaaaa 266  Q
     ||   |||||||||||||| ||| ||| |||||||| | |||||||||||||    
T  31380599 cttgagttgtgcataaatagtgaaatgaggatcaatagt-ggtatgaagaaaa 31380650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 13266812 - 13266876
Alignment:
Q  171 gagataaatgaacatgtggctcatgatcctaaaatcaaggaagttttgattgtgcataaatagag 235  Q
    |||||||||| ||||||||||  | ||  |||||| ||||||| || ||||||||||||||||||    
T  13266812 gagataaatggacatgtggctagtaattttaaaattaaggaagcttggattgtgcataaatagag 13266876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 113 - 274
Target Start/End: Original strand, 45610537 - 45610699
Alignment:
Q  113 ttttgttatgattcaaattgg-catataaaaaattacatttggcataacatcattggttgagataaatgaacatgtggctcatgatcctaaaatcaagga 211  Q
    ||||||||||||||||||||| |||| ||  ||||||| ||||||||| || ||| ||||||  ||||  ||||||  ||  |||| |||| ||||||||    
T  45610537 ttttgttatgattcaaattggacatagaagtaattacacttggcataatataatttgttgaggcaaatagacatgtaactagtgattctaagatcaagga 45610636  T
Q  212 agttttgattgtgcataaatagagaattgatgatcaataatgggtatgaagaaaactgatgaa 274  Q
    || |||| |||||||||||||| | |  ||| ||||||||||| ||||||||| | |||||||    
T  45610637 aggtttggttgtgcataaataggggaaagattatcaataatggttatgaagaatattgatgaa 45610699  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 146 - 347
Target Start/End: Original strand, 4848726 - 4848930
Alignment:
Q  146 tacatttggcataacatcattggttgagataaatgaacatgtggctcatga-tcctaaaatcaaggaagttttgattgtgcataaatagagaattgatga 244  Q
    ||||||||||||||||| |||||||||   ||||| ||||||||||  ||| |   ||||||||||||| || |||| ||||||| || |||| || |||    
T  4848726 tacatttggcataacataattggttgacgcaaatggacatgtggctagtgattaaaaaaatcaaggaagcttggattatgcataagtatagaaatggtga 4848825  T
Q  245 tcaataatgggtatgaagaaaactgatgaactctctcatctctccct--cactctcttgaagagtaatggcttaagtctttggacttagtcttcttctat 342  Q
    |||||||| || |  ||||||| || |||| |||||  ||||||  |   ||||||||| | ||||||| ||||||||||| |||||||||||| |||||    
T  4848826 tcaataataggaacaaagaaaattgttgaaatctcttttctctctttagtactctcttgtacagtaatgacttaagtctttagacttagtcttcctctat 4848925  T
Q  343 ctttt 347  Q
     ||||    
T  4848926 atttt 4848930  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 49272661 - 49272703
Alignment:
Q  303 agagtaatggcttaagtctttggacttagtcttcttctatctt 345  Q
    ||||||||| ||||||| |||||||| ||||||||||||||||    
T  49272661 agagtaatgacttaagtttttggactaagtcttcttctatctt 49272703  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 230
Target Start/End: Original strand, 6919321 - 6919437
Alignment:
Q  114 tttgttatgattcaaattggcatataaaaaattacatttggcataacatcattggttgagataaatgaacatgtggctcatgatcctaaaatcaaggaag 213  Q
    |||||||||||||||  | ||||||   ||| |||| |||||||||||| ||||||||||  ||||| ||||||||||  |||| ||||||| ||| |||    
T  6919321 tttgttatgattcaatatagcatatgggaaaatacacttggcataacataattggttgaggcaaatggacatgtggctagtgatactaaaattaagaaag 6919420  T
Q  214 ttttgattgtgcataaa 230  Q
    ||| |||||||||||||    
T  6919421 tttggattgtgcataaa 6919437  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 377
Target Start/End: Original strand, 29181491 - 29181751
Alignment:
Q  123 attcaaattggcatataaaaaattacatttggcataacatcattggttgagataaatgaacatgtggctcatgatcctaaaatcaaggaagttttgattg 222  Q
    ||||||| | |||||| || || |||| |||||||  ||| | ||||||||  ||||||||| ||||||  ||||||||||||||| ||||||| |  |     
T  29181491 attcaaaatagcatatgaagaaatacacttggcatgtcattactggttgaggcaaatgaacaagtggctagtgatcctaaaatcaaagaagtttgggata 29181590  T
Q  223 tgcataaatagagaattgatgatcaataatgggtatgaagaaaactgatgaactctctcatctctccct----cactctcttgaagagtaatggcttaag 318  Q
    |||||||||||  || | |||||||||||| ||  ||||||| | || || | |||||| |||||||||     ||||| | | ||||||||| ||| ||    
T  29181591 tgcataaataggaaaataatgatcaataataggggtgaagaatattgctggagtctctcctctctccctttagtactctttagtagagtaatgactt-ag 29181689  T
Q  319 tctttggacttagtcttcttctatcttttcctatc---tcttttatgtattaagaacaccaa 377  Q
    |||| ||||||||| ||||| ||||||| | | ||   ||||||||||| ||||||||||||    
T  29181690 tcttgggacttagttttcttgtatctttccttttctcttcttttatgtactaagaacaccaa 29181751  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 291
Target Start/End: Complemental strand, 15091948 - 15091898
Alignment:
Q  241 atgatcaataatgggtatgaagaaaactgatgaactctctcatctctccct 291  Q
    |||||||||| ||| ||||||||||| ||||||| || |||||||||||||    
T  15091948 atgatcaatagtggatatgaagaaaattgatgaagtcactcatctctccct 15091898  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 364
Target Start/End: Original strand, 29274555 - 29274690
Alignment:
Q  234 agaattgatgatcaataatgggtatgaagaaaactgatgaactctctcatctctccctc-------actctcttgaagagtaatggcttaagtctttgga 326  Q
    |||| |||||||||||||| |||||||| || | ||||||| ||||||  |||||||||       ||||||| | |||||||||| ||||||| |||||    
T  29274555 agaaatgatgatcaataattggtatgaaaaataatgatgaagtctctc--ctctccctcctttgatactctctagtagagtaatggtttaagtccttgga 29274652  T
Q  327 cttagtcttcttctatcttttcctatctcttttatgta 364  Q
    ||||| ||||||||||||||| || | |||||||||||    
T  29274653 cttagccttcttctatctttttctttatcttttatgta 29274690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 152 - 266
Target Start/End: Original strand, 49138095 - 49138208
Alignment:
Q  152 tggcataacatcattggttgagataaatgaacatgtggctcatgatcctaaaatcaaggaagttttgattgtgcataaatagagaattgatgatcaataa 251  Q
    ||||||||||| |||||| |||  ||||  |||||| |||  | |||||||||| ||||||| || |||||| |||||||||  || |||| ||||||||    
T  49138095 tggcataacataattggtcgaggcaaattgacatgtagctattcatcctaaaataaaggaagcttggattgtacataaataggaaaatgat-atcaataa 49138193  T
Q  252 tgggtatgaagaaaa 266  Q
    |||||||||||||||    
T  49138194 tgggtatgaagaaaa 49138208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 252
Target Start/End: Original strand, 4625300 - 4625396
Alignment:
Q  155 cataacatcattggttgagataaatgaacatgtggctcatgatcctaaaatcaaggaagttttg-attgtgcataaatagagaattgatgatcaataat 252  Q
    |||||||| |||||||||| |||||| |||| || ||||| ||| ||| |||||||  |||||| |||| |||||||||| | ||||||||||||||||    
T  4625300 cataacataattggttgaggtaaatggacatttgactcataatcttaagatcaagg--gttttggattgcgcataaataggggattgatgatcaataat 4625396  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 12900877 - 12900920
Alignment:
Q  303 agagtaatggcttaagtctttggacttagtcttcttctatcttt 346  Q
    |||||||||||||| ||||||| ||| |||||||||||||||||    
T  12900877 agagtaatggcttaggtctttgaactaagtcttcttctatcttt 12900920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 13399978 - 13400039
Alignment:
Q  118 ttatgattcaaattggcatataaaaaattacatttggcataacatcattggttgagataaat 179  Q
    |||||||||||| | |||| ||| ||| ||||||||| ||||||| |||| |||||||||||    
T  13399978 ttatgattcaaaatagcatttaagaaagtacatttggtataacataattgtttgagataaat 13400039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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