View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_76 (Length: 383)

Name: NF7850A_low_76
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_76
NF7850A_low_76
[»] chr1 (1 HSPs)
chr1 (18-383)||(38528723-38529095)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 38529095 - 38528723
Alignment:
Q  18 gtaatagtttacaatatcatcctctaaatatcaaatcaaattttcatataaaaaatgcaatagaacta-gagaagtcatccatgacgaatgaatgaacat 116  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||    
T  38529095 gtaatagtttacaatatcatactctaaatatcaaatctaattttcatataaaaa-tgcaatagaactaagagaagtcatcaatgacgaatgaatgtacat 38528997  T
Q  117 tgtaacattccacaaaat----caatgcctta-----gttagtagtagtaccctaccacatatatagaattagatacttgcgctttaagcaatagcaaag 207  Q
     | | |||||||||||||    ||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38528996 -gcaccattccacaaaataaatcaatgccttaccttagttagtagtagtaccctaccacatatatagaattagatacttgcgctttaagcaatagcaaag 38528898  T
Q  208 tcaaatataatattcactctagcttagcattcccattcaaacagtactatactccttatatatactatttttagcgtataatcttacaaactgagatctc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38528897 tcaaatataatattcactctagcttagcattcccattcaaacagtactatactccttatatatactatttttagcgtataatcttacaaactgagatctc 38528798  T
Q  308 gtattgtagtttgtacccnnnnnnnncctttcaacccatcacttaaaatctcgaatgatatcaccaacttttatca 383  Q
    ||||||||||||||||||         |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38528797 gtattgtagtttgtaccctttttttt-ctttcaacccatcacttaaaatctcgaatgatatcacccacttttatca 38528723  T

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