View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_77 (Length: 381)
Name: NF7850A_low_77
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_77 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 6915707 - 6916068
Alignment:
| Q |
1 |
acacaatgacttctatgaatgttcctgagcccgtgatgtcattagctgtacagccagtctcaaaagattctggagggaaattttcaaaagctttgaaccg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6915707 |
acacaatgacttctatgaatgttcctgagcccgtgatgtcattagctgtacagccagtctcaaaagattctggagggaaattttcaaaagctttgaaccg |
6915806 |
T |
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| Q |
101 |
cttccaaagagaggatcctactttccgtgttagcttggacccagagagtgggcaaacaatcatttctgggatgggagaactacacttagatatttatgtt |
200 |
Q |
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| T |
6915807 |
cttccaaagagaggatcctacttttcgtgttagcttggacccagagagtgggcaaacaatcatttctggaatgggagaactacacttagatatttatgtt |
6915906 |
T |
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| Q |
201 |
aaatgcattaagatcgagtatggtgttgatgctacagttggaaagccccgggtaaacttcagagaaactgttactcaacgtgctgattttgattatttac |
300 |
Q |
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| T |
6915907 |
aaacgcattaagatggagtatggggttgatgctacagttggaaagccccgggtaaacttcagagaaactgttactcaacgtgctgattttgattatttac |
6916006 |
T |
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| Q |
301 |
ataagaagcaatctggaggacaaggacaatatggacgagtgattggatatattgaaccactt |
362 |
Q |
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| T |
6916007 |
ataagaagcaatctggagggcaaggacaatatggacgagtgattggatatattgaaccactt |
6916068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 6e-53; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 225 - 346
Target Start/End: Complemental strand, 15039390 - 15039269
Alignment:
| Q |
225 |
gttgatgctacagttggaaagccccgggtaaacttcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatctggaggacaag |
324 |
Q |
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| T |
15039390 |
gttgatgctacagttggaaagccccgtgtaaacttcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatccggagggcaag |
15039291 |
T |
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| Q |
325 |
gacaatatggacgagtgattgg |
346 |
Q |
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| T |
15039290 |
gacaatatggacgggtgattgg |
15039269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 15040137 - 15040064
Alignment:
| Q |
81 |
ttttcaaaagctttgaaccgcttccaaagagaggatcctactttccgtgttagcttggacccagagagtgggca |
154 |
Q |
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| T |
15040137 |
ttttcaaaagctttgaaccgcttccaaagagaggatcctactttccgtgttggcttggacccagagagtgggca |
15040064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 15040315 - 15040241
Alignment:
| Q |
3 |
acaatgacttctatgaatgttcctgagcccgtgatgtcattagctgtacagccagtctcaaaagattctggaggg |
77 |
Q |
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| T |
15040315 |
acaatgacttcaatgagtgttcctgagcctgtgatgtcattagctgtacagccagtctcaaaagattctggaggg |
15040241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 15039977 - 15039923
Alignment:
| Q |
156 |
acaatcatttctgggatgggagaactacacttagatatttatgttaaatgcatta |
210 |
Q |
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| T |
15039977 |
acaattatttctggaatgggagaactgcacttagatatctatgttgaacgcatta |
15039923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 43895598 - 43895529
Alignment:
| Q |
57 |
gtctcaaaagattctggagggaaattttcaaaagctttgaaccgcttccaaagagaggatcctactttcc |
126 |
Q |
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| T |
43895598 |
gtctcaaaagattctggagggcaattttcaactgctttgaatggttttcaaagaaaggatcctactttcc |
43895529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 44306022 - 44305953
Alignment:
| Q |
57 |
gtctcaaaagattctggagggaaattttcaaaagctttgaaccgcttccaaagagaggatcctactttcc |
126 |
Q |
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| T |
44306022 |
gtctcaaaagattctggagggcaattttcaagtgctttgaatggttttcaaagaaaggatcctactttcc |
44305953 |
T |
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