View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_8 (Length: 568)
Name: NF7850A_low_8
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 17 - 548
Target Start/End: Complemental strand, 43654559 - 43654016
Alignment:
| Q |
17 |
gataattcactcatgaatccatgatagttcaatatgctgtagctggggcctgtattcttctgatgnnnnnnnttgagaaatttttataataataatcata |
116 |
Q |
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| T |
43654559 |
gataattcactcatgaatccatgatagttcaatatgctgtagctgg--cctatattcttctgatgaaaaaaattgagaaatttttataataataatcata |
43654462 |
T |
|
| Q |
117 |
ataacaacaataacatcacagtgtttgaagagttgataacatgactctcttttaataaaagaacgagatgttcatgatattagtctcataatgaacccnn |
216 |
Q |
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| T |
43654461 |
ataacaacaataacatcacagtgtttgaagagttgataacataactctcttttaataaaagaacgagatgttgatgatattagtctcataatggatccaa |
43654362 |
T |
|
| Q |
217 |
nnnnncttaagttgtagaaatactagaggttaattgaaaattaaatattttaattatgattacttagcaaagcaccgtatcccaacttttgttccttgca |
316 |
Q |
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| T |
43654361 |
aaaa-cttaagttgtagaaatactagaggttaattgaaaattaaatattttaattatgattagttagcaaagcaccgtatcccaacttttggtccttgca |
43654263 |
T |
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| Q |
317 |
aa---------------ctaaaaatttatccacctaggcatatgaattgcatatgaaattgtagtgggtcctaaactatttgaagtatgtggactgaaat |
401 |
Q |
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| T |
43654262 |
aattaaaataattcactctaaaaatttatccacctaggcatatgaattgcatatgaaattgtagtgggtcctaaactatttgaactatgtggactgaaat |
43654163 |
T |
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| Q |
402 |
gccccaaatacatcaaagagaacaagatttgccaataggaaatcaatgcaatctcaccttatccacacgccaaccacaatctttgattacaccctttgtt |
501 |
Q |
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| T |
43654162 |
gccccaaatacatcaaagagaacaagatttgccaataggaaatcaatgcaatctcaccttatccacacgccaaccacaatctttgattacaccctttgtt |
43654063 |
T |
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| Q |
502 |
ccttgcaacataagttgacttaatttttatttcctttggactctgat |
548 |
Q |
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| T |
43654062 |
ccttgcaacataagttgacttaatttttatttcctttggactctgat |
43654016 |
T |
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