View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_86 (Length: 369)
Name: NF7850A_low_86
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_86 |
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| [»] scaffold1030 (2 HSPs) |
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Alignment Details
Target: scaffold1030 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: scaffold1030
Description:
Target: scaffold1030; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 157 - 321
Target Start/End: Original strand, 2252 - 2416
Alignment:
| Q |
157 |
tttagtggtgtggtgatgtaggagatgtaagggttttctgtgcttattttactatatatgttctttttgtttttcaggtctatgttcttcttaagcagag |
256 |
Q |
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| T |
2252 |
tttagtggtgtcgtgatgtaggagatgtaagggttttctgtgcgtattttactatatatgttctttttgttttccaggtctatgttcttcttaagcagag |
2351 |
T |
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| Q |
257 |
tttacattatcaataaaagtttccgatnnnnnnngagtagttatactccattatactttcatgtt |
321 |
Q |
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| T |
2352 |
tttacattatcaataaatttttccgataaaaaaagagtagttatactccattagattttcatgtt |
2416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1030; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 2018 - 2136
Alignment:
| Q |
43 |
ggtgtttatttggtctcatttgtgagaagagaacattaggtgctactataggtgttttggttggttttaattgtttcttaaaaggtttttggtacgaata |
142 |
Q |
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| T |
2018 |
ggtgtttatttggtctcatttgtgcgaagagaacattaggtgctactataggtgttttggttggttttaattgtttttttaaaggtttttggtacaaata |
2117 |
T |
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| Q |
143 |
gcatatgataggtgtttag |
161 |
Q |
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| T |
2118 |
gcatatgataggtgtttag |
2136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 160 - 362
Target Start/End: Complemental strand, 14279281 - 14279083
Alignment:
| Q |
160 |
agtggtgtggtgatgtaggagatgtaagggttttctgtgcttattttactatatatgttctttttgtttttcaggtctatgttcttcttaagcagagttt |
259 |
Q |
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| T |
14279281 |
agtggtgtgttgatgtatgagatgtaagggttttctgtgcgtattttactat----gttattttttatttataggtctatgttcttcttaagcaaagttt |
14279186 |
T |
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| Q |
260 |
acattatcaataaaagtttccgatnnnnnnngagtagttatactccattatactttcatgtttgtaattgtgtaatcattaatatacaacgggtcaacac |
359 |
Q |
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| T |
14279185 |
acattatcaataaatttttccgttaaaaaaagagtagttatactctattacatttttatgtttgtaattgtgcaatcattaatatacaatgaatcaacac |
14279086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 14279519 - 14279400
Alignment:
| Q |
43 |
ggtgtttatttggtctcatttgtgagaagagaacattaggtgctactataggtgttttggttggttttaattg-tttcttaaaaggtttttggtacgaat |
141 |
Q |
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| T |
14279519 |
ggtgtttatttggtctcatttgtgcgaagagaacattaggtgctagtataggtgttttggtcggttttaattgttttttttaaaggtttttgatacgaat |
14279420 |
T |
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| Q |
142 |
agcatatgataggtgtttag |
161 |
Q |
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| T |
14279419 |
agcatatgatagctgtttag |
14279400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 273
Target Start/End: Complemental strand, 14284632 - 14284573
Alignment:
| Q |
214 |
atgttctttttgtttttcaggtctatgttcttcttaagcagagtttacattatcaataaa |
273 |
Q |
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| T |
14284632 |
atgttctttttgttttaccggtctatgttcttcttgaggagagactactttatcaataaa |
14284573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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