View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_94 (Length: 362)
Name: NF7850A_low_94
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_94 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 362
Target Start/End: Original strand, 426852 - 427199
Alignment:
| Q |
16 |
aacgagagcatagcgaaaaataatcaaccaattacaaattagagtggagcggaattcaaggaaagtcataggaaaatgtggaagtcaacaaaaagctgcc |
115 |
Q |
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| T |
426852 |
aacgagagcatagcgaaaaataatcaaccaattacaaattagagtggagcggaattcaaggaaagtcataggaaaatgtggaagttaacaaaaagctgcc |
426951 |
T |
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| Q |
116 |
aaggagaaatatacttgagga-tgtatttgtgaggcgtcatttcacttgatatatttgcatttttctttaagaatagataaactattaaaataaattatt |
214 |
Q |
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| T |
426952 |
aaggagaaatatacttgaggaatgtatttgtgaggcttcatttcacttgatatattagcatttttctttaagaatagataaactattaaaataaattatt |
427051 |
T |
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| Q |
215 |
tagatgagaggataattggttaagaaataaaaataaacaaagatatcgaattcaccggacttaaatcacccaagtgaaattcatccgtacacaagttagt |
314 |
Q |
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| T |
427052 |
tagatgagaggataattggttaagaaataaaaataaacaaagatatcaaattcatcggacttaaatcacccaagtgaaattcatccatacacaagttagt |
427151 |
T |
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| Q |
315 |
ttagattgggacatatcctaggctggaacaatatacaacaaaggaata |
362 |
Q |
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| T |
427152 |
ttagattgggacatatcctaggctggaacaatatacaacaaaggaata |
427199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 34799664 - 34799704
Alignment:
| Q |
199 |
attaaaataaattatttagatgagaggataattggttaaga |
239 |
Q |
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| T |
34799664 |
attaaaataaaatatttagatgagagtataatttgttaaga |
34799704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 39077881 - 39077795
Alignment:
| Q |
22 |
agcatagcgaaaaataatcaaccaattacaaattagagtggagcggaattcaaggaaagtcataggaaaatgtggaagtcaacaaaa |
108 |
Q |
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| T |
39077881 |
agcatagaaaaaaataatcaaccaattataaattaaagtggagcggaattcaagaaaagttgtgggaaaaggtggaagtcaacaaaa |
39077795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 22211216 - 22211281
Alignment:
| Q |
37 |
aatcaaccaattacaaattagagtggagcggaattcaaggaaagtcataggaaaatgtggaagtca |
102 |
Q |
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| T |
22211216 |
aatcaatcaattataaattagagtggagcggaatttaagggaagccacgggaaaaggtggaagtca |
22211281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 37685222 - 37685262
Alignment:
| Q |
199 |
attaaaataaattatttagatgagaggataattggttaaga |
239 |
Q |
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| T |
37685222 |
attaaaataaattatttagatgagagaatgaatggttaaga |
37685262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 49177311 - 49177279
Alignment:
| Q |
192 |
ataaactattaaaataaattatttagatgagag |
224 |
Q |
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| T |
49177311 |
ataaattattaaaataaattatttagatgagag |
49177279 |
T |
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