View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_97 (Length: 358)
Name: NF7850A_low_97
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_97 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 353
Target Start/End: Original strand, 48290561 - 48290906
Alignment:
| Q |
8 |
atgaatgagctaacgttgatgaaagcaaatacagtggttgatgttatcaattaaatgaaatgaaaagccctaaaagtttagacattatcaaccaaaaaag |
107 |
Q |
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| T |
48290561 |
atgaatgagctaacgttgatgaaagcaattacagtggttgatgttatcaattaaatgaaatgaaatgccctaaaagtttagacattatcaaccaaaaaag |
48290660 |
T |
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| Q |
108 |
gcagtagtgttggctaattgtgatttttgcaagctaagctataatcaatttactattaattataactagattaaagatgctacatctctttcttcatgtc |
207 |
Q |
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| T |
48290661 |
gcagtagtgttggctaattgtgatttttgcaagctaagctataatcaatttactattaattataactagattaaagatgctacatctctttcttcatgtc |
48290760 |
T |
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| Q |
208 |
cctttccatttacaccactcattgcaagctttgaacgcttcttatatttcttattatcaacatctacctctttaattttctgttttctcaaaccttcttc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48290761 |
cctttccatttacaccactcattgcaagctttgaacgcttcttatatttcttattatcaacatctacctctttaattttctgttttctcaaaccttcttc |
48290860 |
T |
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| Q |
308 |
acatttaattaatttcatcaattttggccaataaaaggagagaaat |
353 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48290861 |
acatttaattaatttcatcaattttgaccaataaaaggagagaaat |
48290906 |
T |
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