View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_98 (Length: 357)
Name: NF7850A_low_98
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_98 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 121 - 286
Target Start/End: Original strand, 31413058 - 31413223
Alignment:
| Q |
121 |
ttttgttttgagaaagatttgatcatgtggagcaagatatcatattggtttgatacacacatttaatgcaccattggaatatggaaggggaaaatttgaa |
220 |
Q |
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| T |
31413058 |
ttttgttttgagaaagatatgatcatgtggagcaagatatcatattggtttgatacacacatttaatgcaccattggaatatggaaggggaaaatttgaa |
31413157 |
T |
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| Q |
221 |
tttcaaaccaatgtggtgaaccgtgcaagtcaaataagagtaaatgcaattaacccagcattaaca |
286 |
Q |
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| T |
31413158 |
tttcaaaccaatgtggtgaaccgtgcaagtcaaataagagtaaatgcaattaacccagcattaaca |
31413223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 31412910 - 31412944
Alignment:
| Q |
7 |
agaagcaaaatgaaaatgggtttggagatggagaa |
41 |
Q |
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| T |
31412910 |
agaagcaaaatgaaaatgggtttggagatggagaa |
31412944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 31412953 - 31412991
Alignment:
| Q |
24 |
gggtttggagatggagaagaggatgaaggagttatgttt |
62 |
Q |
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| T |
31412953 |
gggtttggagatggagaaagggatgaaggagttatgttt |
31412991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 154 - 286
Target Start/End: Complemental strand, 38014642 - 38014510
Alignment:
| Q |
154 |
aagatatcatattggtttgatacacacatttaatgcaccattggaatatggaaggggaaaatttgaatttcaaaccaatgtgg-tgaaccgtgcaagtca |
252 |
Q |
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| T |
38014642 |
aagatatcatattggtttgatacacacatttaatgcgccattggaatatggaagagg-aaatttgaatttcaaaccaatgtggttgaaccgtgcaagtca |
38014544 |
T |
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| Q |
253 |
aataagagtaaatgcaattaacccagcattaaca |
286 |
Q |
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| T |
38014543 |
aataacaataaatgcaatcaacccagcattaaca |
38014510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 2769822 - 2769786
Alignment:
| Q |
135 |
agatttgatcatgtggagcaagatatcatattggttt |
171 |
Q |
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| T |
2769822 |
agatatgatcatgtggagcaagatatcttattggttt |
2769786 |
T |
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