View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_99 (Length: 356)

Name: NF7850A_low_99
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_99
NF7850A_low_99
[»] chr8 (2 HSPs)
chr8 (11-187)||(42944135-42944311)
chr8 (257-356)||(42943966-42944065)
[»] chr4 (2 HSPs)
chr4 (35-108)||(33813471-33813544)
chr4 (35-103)||(49806925-49806993)
[»] chr3 (3 HSPs)
chr3 (35-115)||(25986604-25986684)
chr3 (36-122)||(54158617-54158702)
chr3 (40-122)||(48192825-48192906)
[»] chr5 (2 HSPs)
chr5 (36-115)||(11735815-11735895)
chr5 (39-106)||(11736271-11736338)
[»] chr1 (1 HSPs)
chr1 (36-88)||(36155546-36155598)
[»] chr2 (1 HSPs)
chr2 (38-84)||(19182776-19182822)


Alignment Details
Target: chr8 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 42944311 - 42944135
Alignment:
Q  11 cttctgcctctatcaccnnnnnnnttgatatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaacataacta 110  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42944311 cttctgcctctatcaccaaaaaaattgatatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaacataacta 42944212  T
Q  111 ttttttcaacactttttaggaacttgcaggttctttctgaagcttctgtctattttacaaatgaaatggcgagaata 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42944211 ttttttcaacactttttaggaacttgcaggttctttctgaagcttctgtctattttacaaatgaaatggcgagaata 42944135  T

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Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 257 - 356
Target Start/End: Complemental strand, 42944065 - 42943966
Alignment:
Q  257 atatgttccaagtttaaaatggcgaccataccactgaattcttttgtgtaccaattttttgtgctcgccattccaatattcaaagattcttacaggaaat 356  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42944065 atatgttccaagtttaaaatggcgaccatgccattgaattcttttgtgtaccaattttttgtgctcgccattccaatattcaaagattcttacaggaaat 42943966  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 33813544 - 33813471
Alignment:
Q  35 ttgatatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaacataac 108  Q
    ||||||||||||||||||||| |||| |||||||| |||||||||||||||||| || | ||||||||||||||    
T  33813544 ttgatatgtctgcccctagtttaaaattattgatagaaatgcccctgttcttcattttagttggcgaacataac 33813471  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 49806993 - 49806925
Alignment:
Q  35 ttgatatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaac 103  Q
    ||||||| |||||||||| || ||||  ||||||||||| |||| ||||||||| || |||||| ||||    
T  49806993 ttgatatatctgcccctaattcaaaatcattgatacaaaagcccttgttcttcatttgatttggtgaac 49806925  T

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Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 25986604 - 25986684
Alignment:
Q  35 ttgatatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaacataactattttt 115  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||  || | ||||||||||| || ||||||    
T  25986604 ttgatatgtctgcccctagttgaaaattattgatacaattgcccctgttcttctttttagttggcgaacatgaccattttt 25986684  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 54158702 - 54158617
Alignment:
Q  36 tgatatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaacataactattttttcaacac 122  Q
    ||||||||||||||||| || |||| ||||| || |||||||| ||||||||||||   |||||||| ||| | |||||||||||||    
T  54158702 tgatatgtctgcccctatttcaaaattattgttaaaaatgcccttgttcttcaattaggttggcgaatatagc-attttttcaacac 54158617  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 48192825 - 48192906
Alignment:
Q  40 atgtctgcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaacataactattttttcaacac 122  Q
    ||||||||| |||||| |||| |||||||| ||||| ||||||| |||||||   |||||||||||  | |||||||||||||    
T  48192825 atgtctgccactagttcaaaattattgataaaaatgtccctgttgttcaattaggttggcgaacatggc-attttttcaacac 48192906  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 11735815 - 11735895
Alignment:
Q  36 tgatatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaacata-actattttt 115  Q
    |||||||||| ||||||||| |||| ||||||| ||| | ||| ||||||||| || |||||||||||||| |||||||||    
T  11735815 tgatatgtctacccctagttcaaaattattgatgcaatttcccttgttcttcattttatttggcgaacatacactattttt 11735895  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 11736338 - 11736271
Alignment:
Q  39 tatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttcaattcatttggcgaacata 106  Q
    ||||||||||||||||| |||| ||||||||||| ||||| | ||||||| ||||| || ||||||||    
T  11736338 tatgtctgcccctagttcaaaattattgatacaattgccctttttcttcatttcatctgacgaacata 11736271  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 36155546 - 36155598
Alignment:
Q  36 tgatatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttca 88  Q
    |||||||||||||||||||||| ||||| || |||| |||||| |||||||||    
T  36155546 tgatatgtctgcccctagttgagaactaatgttacatatgcccttgttcttca 36155598  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 19182776 - 19182822
Alignment:
Q  38 atatgtctgcccctagttgaaaactattgatacaaatgcccctgttc 84  Q
    |||||||||||||||||| |||| |||||||||| |||||| |||||    
T  19182776 atatgtctgcccctagttcaaaagtattgatacatatgcccttgttc 19182822  T

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