View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850_high_11 (Length: 502)
Name: NF7850_high_11
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 29012497 - 29012980
Alignment:
| Q |
1 |
atcaatcaatagcatagtccgccaagaaacaacggccatattcaagcatgaagaacattcataacaatgagtgatccgataattattatcaaatgcttgg |
100 |
Q |
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| T |
29012497 |
atcaatcaatagcatagtccgccaagaaacaacggccatattcaagcatgaagaacatgcataacaatgagtgatc-gataattattatcaaatgcttgg |
29012595 |
T |
|
| Q |
101 |
gacaacnnnnnnn-gttttgaatggaggtgacaaacagtacgtcaaacagcttggggcatcttcattgctaaaaccattagtttgttcttcaatcatttt |
199 |
Q |
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| T |
29012596 |
gacaacttttttttgttttgaatggaggtgacaaacagtacgtcagacagcttgaggcatcttcattgctaaaaccattattttggtcttcaatcatttt |
29012695 |
T |
|
| Q |
200 |
ttgtgagtctgaatacgctaaatgagatttaaaaattatatctgatacttactgttttataaatcaaacgtgtcggtgattaaaccttgaatattttgat |
299 |
Q |
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| T |
29012696 |
ttgtgagtctgaatacgctacatgagatttaaaaactatatctgatacttactgttttataaatcaaacgtgttagtgattaaaccttgaatattttgat |
29012795 |
T |
|
| Q |
300 |
tagactagagaatacttaagcatgcacactaaattcagtttttaattgcttattaaagattctacgaaatagttataattttaacacacaataaaacaat |
399 |
Q |
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| T |
29012796 |
tagactagagaatacttaagcatgcacactaaaatcagtttttaattgcttattaaagattctacgaaatagttatgattttaacacacaataaaacaat |
29012895 |
T |
|
| Q |
400 |
tttatgtggtgcattagttgtatatgaggcacatgtctcatggctaatctcatcgtcgactgtttgtcatatttgcatgataacc |
484 |
Q |
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| T |
29012896 |
tttatgtggtgcattagttgtatatgaggcacatgtcttatggctaatctcatcgtcgactgtttgtcatatttgcatgataacc |
29012980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 421
Target Start/End: Original strand, 36748324 - 36748411
Alignment:
| Q |
334 |
tcagtttttaattgcttattaaagattctacgaaatagttataat-tttaacacacaataaaacaattttatgtggtgcattagttgta |
421 |
Q |
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||||||||||||||||||||| || ||| | | ||||||||| || ||||||||||| |||||||||||| |||| |||||| ||||| |
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| T |
36748324 |
tcagtttttaattgcttattacaggttccatgcaatagttatgatcattaacacacaa-aaaacaattttacgtggcgcattaattgta |
36748411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 34567900 - 34567977
Alignment:
| Q |
154 |
gggcatcttcattgctaaaaccattagtttgttcttcaatcattttttgtgagtctgaatacgctaaatgagatttaa |
231 |
Q |
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| T |
34567900 |
gggcatcttcattactaaaaccataatttggttattcaataattttttatgggtctgaatatgccagataagatttaa |
34567977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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