View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850_high_12 (Length: 487)
Name: NF7850_high_12
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_high_12 |
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| [»] scaffold0386 (3 HSPs) |
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Alignment Details
Target: scaffold0386 (Bit Score: 148; Significance: 7e-78; HSPs: 3)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 2592 - 2410
Alignment:
| Q |
17 |
aacaaaactctgattacaactacattttaattagcaactaattcaccccccataaaattggaaaaagatgatatttcagattttcttcaacatagcttac |
116 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2592 |
aacaaaactctaattacaactacattttaattagcaagtaattcaccccccataaaattggaaaaagatgatatttcagattttcttcaacatagcttac |
2493 |
T |
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| Q |
117 |
aacattgaggaaagtctctctcaatacccccatgcaatagaatttgcattcctcacgatagcttaactgtgatccaaatctagt |
200 |
Q |
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| T |
2492 |
aacattgaggaaagtctctctcaatacccccatgcaataaaatttgcatt-ctcacgacagcttatctgtgatcgtaatctagt |
2410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 198 - 335
Target Start/End: Complemental strand, 2375 - 2238
Alignment:
| Q |
198 |
agtaattgcagaaaaatggtcctctattaattctgttaacaaaccaatgctttatgctcacaatatattataggatgatctccttaacaagtaaagatta |
297 |
Q |
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| T |
2375 |
agtaattgcacaaaaatggtcctgtattaattttggtaacaaaccaatgctttatgctcacaatatattataggatgatctccttaacaagtaaagatta |
2276 |
T |
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| Q |
298 |
tatatcttacaattgaactagagaataatgctcttata |
335 |
Q |
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| T |
2275 |
tatatcttacaattgaactagagaataatgctcttata |
2238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 424 - 487
Target Start/End: Complemental strand, 2170 - 2107
Alignment:
| Q |
424 |
attattgcgaattttcctgagtttaccaagttcactacaagttcaattgagtaaattcagtttc |
487 |
Q |
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| T |
2170 |
attattgtgaatttacctgagtttaccaagttcactacaagttcaattgagtaaattcagtttc |
2107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 6076130 - 6075950
Alignment:
| Q |
17 |
aacaaaactctgattacaactacattttaatta-gcaactaattcaccccccataaaattggaaaaagatgatatttcagattttcttcaacatagctta |
115 |
Q |
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||||||||||| |||| || ||| ||||||||| | || |||||||||| ||||||||||| |||||||| |||||||||| |||||||||||||||||| |
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| T |
6076130 |
aacaaaactctaattaaaaatacgttttaattaagaaagtaattcaccctccataaaattg-aaaaagataatatttcagaatttcttcaacatagctta |
6076032 |
T |
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| Q |
116 |
caacattgaggaaagtctctctcaataccccc-atgcaatagaatttgcattcctcacgatagcttaactgtgatccaaatc |
196 |
Q |
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| T |
6076031 |
caacattggagaaagtccctttcattgccccccatgcaatagaatttgcattcctcacgatagcctaactgtgatccaaatc |
6075950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 209 - 334
Target Start/End: Complemental strand, 6075888 - 6075774
Alignment:
| Q |
209 |
aaaaatggtcctctattaattctgttaacaaaccaatgctttatgctcacaatatattataggatgatctccttaacaagtaaagattatatatcttaca |
308 |
Q |
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| T |
6075888 |
aaaaatggtcctctgttaattctggtaacaaaccaatgctttatgctcacaatatattataggat--tctccttaacaagtaaaga---------ttaca |
6075800 |
T |
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| Q |
309 |
attgaactagagaataatgctcttat |
334 |
Q |
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| T |
6075799 |
attgaacttgagaataatgctcttat |
6075774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 5688920 - 5688996
Alignment:
| Q |
197 |
tagtaattg-cagaaaaatggtcctctattaattct---gttaacaaaccaatgctttatgctcacaatatattata |
269 |
Q |
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| T |
5688920 |
tagtaattggcacaaaaatggtcctctattaattcttctggtaacaaaccaatgctttatgctcacaatatattata |
5688996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 5696293 - 5696333
Alignment:
| Q |
294 |
attatatatcttacaattgaactagagaataatgctcttat |
334 |
Q |
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| T |
5696293 |
attatatatcttacaattgaacttgagaataatgctcttat |
5696333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 433 - 478
Target Start/End: Original strand, 5697046 - 5697091
Alignment:
| Q |
433 |
aattttcctgagtttaccaagttcactacaagttcaattgagtaaa |
478 |
Q |
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| T |
5697046 |
aatttacctgtgtttaccaaattcactacaagttcaattgagtaaa |
5697091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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