View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850_high_25 (Length: 351)
Name: NF7850_high_25
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 94 - 308
Target Start/End: Original strand, 4080820 - 4081035
Alignment:
| Q |
94 |
agttgactcttttgtatccctttgttagtttatagtttt-tatgcaatacttagatgtacatgtggtatgccttttaattatctaggtgagaagcattcc |
192 |
Q |
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| T |
4080820 |
agttgactcttttgtatccctttgttagtttatagttttttatgcaatacttagatgtacatgtggtatgccttttaattatctaggtgagaagcattcc |
4080919 |
T |
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| Q |
193 |
ttggcctgatatgagtttattaatatgtttttgttgttcttagggaagccaatcttctgcatgtccttataatttgttttttacttttatatattcgaga |
292 |
Q |
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| T |
4080920 |
ttggcctgatatgagtttattaatatgcttttgttgtccttagggaagccaatcttctgcatgtccttataatttgttttttgcttttatatattcgaga |
4081019 |
T |
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| Q |
293 |
ttggatatggacaatg |
308 |
Q |
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| T |
4081020 |
ttggatatggacaatg |
4081035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 4845837 - 4845769
Alignment:
| Q |
16 |
acatatcacatgttttcatatgtctgttttgaaacgttgttttatcccccatgactttggcttattgtc |
84 |
Q |
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| T |
4845837 |
acatatcacatgttttcatatgtctgttttggaacgttgttttatcccccatgactttggcttattgtc |
4845769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 4845735 - 4845684
Alignment:
| Q |
104 |
tttgtatcccttt-gttagtttatagtttttatgcaatacttagatgtacat |
154 |
Q |
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| T |
4845735 |
tttgtatcccttttgttagtttatagtttttatgcaatatttagatgtacat |
4845684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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