View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850_high_34 (Length: 300)
Name: NF7850_high_34
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 7 - 294
Target Start/End: Complemental strand, 26153079 - 26152791
Alignment:
| Q |
7 |
atggacatcaatgaacaacg-aaaacacatttgatataaaaaatcaaggctttgacaagaatgaatgagtattacaggactcactattcatattcaaact |
105 |
Q |
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| T |
26153079 |
atggacaacaatgaacaacacaaaacacgtttgatataaaaaatgaaggctttgacaagaatgaatgagtattacaggactcactattcatattcaaact |
26152980 |
T |
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| Q |
106 |
ctatctttatacccatatattctcttccaagttgaataatgaattcagtaaattttgccaaaatttggcactcttcatgtgttttgacctctgaaacaaa |
205 |
Q |
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| T |
26152979 |
ctatctttatatccatatattctcttccaagttgaataatgaattcagtaaattttgccaaaatttggcactcttcatgtgttttgacctctgaaacaaa |
26152880 |
T |
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| Q |
206 |
accatgaatgaccaattttttcaggttgggacatctttccaaaagtccatctacccattccacaaaaagatcattgattgatgtccatc |
294 |
Q |
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| T |
26152879 |
accatgaatgaccaattttttcaggttgggacatctttccaaaagcccatctacccattccacaaaaagatcattgattgaagtccatc |
26152791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 26158076 - 26157919
Alignment:
| Q |
7 |
atggacatcaatgaacaacgaaaacacatttgatataaaaaatcaaggctttgacaagaatgaatgagtattacaggactcactattcatattcaaactc |
106 |
Q |
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| T |
26158076 |
atggacaacaatgaacaacgtaaacacgtttgatctaaaaaatgaaggctttgacaagaatgaatgagtattacaggactcactattcatattcaaactc |
26157977 |
T |
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| Q |
107 |
tatctttatacccatatattctcttccaagttgaataatgaattcagtaaattttgcc |
164 |
Q |
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| T |
26157976 |
tatctttatatccatatattctcttccaagttgaataataaattcagtaaattttgcc |
26157919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 26171374 - 26171217
Alignment:
| Q |
7 |
atggacatcaatgaacaacgaaaacacatttgatataaaaaatcaaggctttgacaagaatgaatgagtattacaggactcactattcatattcaaactc |
106 |
Q |
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||||||| |||||||||||| |||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26171374 |
atggacaacaatgaacaacgtaaacacgtttgatctaaaaaatgaaggctttgacaagaatgaatgagtattacaggactcactattcatattcaaactc |
26171275 |
T |
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| Q |
107 |
tatctttatacccatatattctcttccaagttgaataatgaattcagtaaattttgcc |
164 |
Q |
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| T |
26171274 |
tatctttatatccatatattctcttccaagttgaataataaattcagtaaattttgcc |
26171217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 26166377 - 26166219
Alignment:
| Q |
7 |
atggacatcaatgaacaacg-aaaacacatttgatataaaaaatcaaggctttgacaagaatgaatgagtattacaggactcactattcatattcaaact |
105 |
Q |
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||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26166377 |
atggacaacaatgaacaacacaaaacacgtttgatataaaaaatgaaggctttgacaagaatgaatgagtattacaggactcactattcatattcaaact |
26166278 |
T |
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| Q |
106 |
ctatctttatacccatatattctcttccaagttgaataatgaattcagtaaattttgcc |
164 |
Q |
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| T |
26166277 |
ctatctttatatccatatattctcttccaagttgaataataaattcagtaaattttgcc |
26166219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 93 - 262
Target Start/End: Original strand, 42345742 - 42345911
Alignment:
| Q |
93 |
tcatattcaaactctatctttatacccatatattctcttccaagttgaataatgaattcagtaaattttgccaaaatttggcactcttcatgtgttttga |
192 |
Q |
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|||||||||||||| | ||||||| |||||| |||||| |||||||| ||||||||||| ||||| | ||| |||| ||||||||||||||||||| |
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| T |
42345742 |
tcatattcaaactcaaactttatatgactatattttcttcctagttgaatcatgaattcagtgaatttggtaaaagtttgacactcttcatgtgttttga |
42345841 |
T |
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| Q |
193 |
cctctgaaacaaaaccatgaatgaccaattttttcaggttgggacatctttccaaaagtccatctaccca |
262 |
Q |
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||| | |||| | |||| |||||||| |||||| || || ||||||| ||||||||||||| ||||||| |
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| T |
42345842 |
tctcagcaacatagccataaatgaccattttttttagattaggacatccttccaaaagtccagctaccca |
42345911 |
T |
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