View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850_high_36 (Length: 298)

Name: NF7850_high_36
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850_high_36
NF7850_high_36
[»] chr1 (13 HSPs)
chr1 (1-285)||(2020881-2021165)
chr1 (31-285)||(2007774-2008028)
chr1 (78-244)||(3217176-3217342)
chr1 (99-244)||(3363965-3364110)
chr1 (172-244)||(3380264-3380336)
chr1 (130-244)||(3366390-3366504)
chr1 (169-241)||(2947210-2947282)
chr1 (101-244)||(3374067-3374210)
chr1 (169-238)||(3353406-3353475)
chr1 (170-244)||(3342702-3342776)
chr1 (189-238)||(1794138-1794187)
chr1 (148-257)||(4333563-4333672)
chr1 (148-244)||(6599659-6599755)
[»] chr2 (4 HSPs)
chr2 (93-257)||(20936082-20936246)
chr2 (93-244)||(20954323-20954474)
chr2 (99-244)||(20924478-20924623)
chr2 (100-257)||(39275231-39275388)
[»] chr4 (1 HSPs)
chr4 (189-244)||(21238958-21239013)


Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 2020881 - 2021165
Alignment:
Q  1 cctattcatgttgtatcgatcaatacaatatgatttatggatttggcacaatttcatgtaggcagtacaggaggagaatactgtcgttttagcacctgcc 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  2020881 cctattcatgttgtatcaatcaatacaatatgatttatggatttggcacaatttcatgtaggcagcacaggaggagaatacggtcgttttagcacctgcc 2020980  T
Q  101 tccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagatt 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||    
T  2020981 tcctattgttgggaaaatgtctttttggagccatccatacccatccaagtgtgacatgtgtgtattgaaggcatctctggtatgaaagctgaattagatt 2021080  T
Q  201 ttatgagatttctacttctctattcgcctatgctagaaaagatggaagtgaagcctgatttgaacgtcggatctaagttgatgtc 285  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2021081 ttttgagatttctacttctctattcgcctatgctagaaaagatggaagtgaagcctgatttgaacgtcggatctaagttgatgtc 2021165  T

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Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 31 - 285
Target Start/End: Original strand, 2007774 - 2008028
Alignment:
Q  31 tgatttatggatttggcacaatttcatgtaggcagtacaggaggagaatactgtcgttttagcacctgcctccttttgttgggaaaatgtctttttggag 130  Q
    |||||||| ||||||  |||||| ||||||||||  ||| ||| |||| ||| ||||||||||||| |||| |||||| |||||| || ||||| |||||    
T  2007774 tgatttatagatttgtaacaattgcatgtaggcaaaacatgagaagaaaactatcgttttagcacccgccttcttttgctgggaagatatctttctggag 2007873  T
Q  131 ccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgccta 230  Q
    |||||||| | || || ||||||||||||   |||||||||||||||||| || ||| |||||||||||||||||||||||||||||||| ||||||||     
T  2007874 ccatccatgctcacccgagtgcgacatgtagggattgaaggcatctctggcatcaaatctgaattagattttatgagatttctacttctccattcgcctg 2007973  T
Q  231 tgctagaaaagatggaagtgaagcctgatttgaacgtcggatctaagttgatgtc 285  Q
    ||||||||||||||  |||||||||  |||| ||||| ||||| |||||||||||    
T  2007974 tgctagaaaagatgagagtgaagcccaattttaacgttggatcgaagttgatgtc 2008028  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 78 - 244
Target Start/End: Complemental strand, 3217342 - 3217176
Alignment:
Q  78 atactgtcgttttagcacctgcctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctc 177  Q
    |||||| | ||||| |||| ||||||| ||||||| || ||||||||||||||||| || | ||| ||| |||||| ||||||   ||  |||| |||||    
T  3217342 atactgaccttttaacacccgcctcctattgttggaaagatgtctttttggagccacccgtgcccctccgagtgcgccatgtgagcataaaaggaatctc 3217243  T
Q  178 tggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatg 244  Q
    ||  |  | | |||||||||||||||| |||||||||||| | ||||| || |||||||||||||||    
T  3217242 tgacaatacatctgaattagattttatcagatttctacttatgtattctcccatgctagaaaagatg 3217176  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 244
Target Start/End: Original strand, 3363965 - 3364110
Alignment:
Q  99 cctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattaga 198  Q
    |||||| ||||||||||||| | |||| ||||||| | || |||||  ||||||||||||||  |||  | |||||||||||  | ||| ||||||||||    
T  3363965 cctcctattgttgggaaaatatattttcggagccaacaatgcccattgaagtgcgacatgtgaggatgcatggcatctctggctttaaatctgaattaga 3364064  T
Q  199 ttttatgagatttctacttctctattcgcctatgctagaaaagatg 244  Q
    |||||| |||||||| ||| | ||||| ||| | ||||||||||||    
T  3364065 ttttatcagatttctgcttttatattctcctgtactagaaaagatg 3364110  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 3380264 - 3380336
Alignment:
Q  172 catctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatg 244  Q
    |||||||||||| ||| | ||||||||||||||  | ||||||||||||||||| ||||||||||||||||||    
T  3380264 catctctggtatcaaatcggaattagattttattcggtttctacttctctattctcctatgctagaaaagatg 3380336  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 3366390 - 3366504
Alignment:
Q  130 gccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcct 229  Q
    |||| |||| ||||| | |||||||||||||   || || |||||||||||||| ||| | ||| ||||||||||  | |||||||||| |||||| |||    
T  3366390 gccagccatgcccattcgagtgcgacatgtgacaatagatggcatctctggtatcaaatcggaactagattttattcggtttctacttcgctattctcct 3366489  T
Q  230 atgctagaaaagatg 244  Q
    |||||||| ||||||    
T  3366490 atgctagacaagatg 3366504  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 2947282 - 2947210
Alignment:
Q  169 aggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaag 241  Q
    |||||| |||||||| ||| |||||||||||||||| |||||||| |||||  |||| || ||||||||||||    
T  2947282 aggcatttctggtatcaaatctgaattagattttatcagatttcttcttctacattctccaatgctagaaaag 2947210  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 244
Target Start/End: Original strand, 3374067 - 3374210
Alignment:
Q  101 tccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagatt 200  Q
    |||| |||||||||| || ||||||  | |||| |||| ||||| ||||| | |||||||   || || |||||||||||||| | | | ||||||||||    
T  3374067 tcctattgttgggaagatatcttttcagggccagccatgcccattcaagtacaacatgtgacaatagatggcatctctggtatcagatcagaattagatt 3374166  T
Q  201 ttatgagatttctacttctctattcgcctatgctagaaaagatg 244  Q
    ||||  | ||||||||||  ||||| ||| ||||||||||||||    
T  3374167 ttattcggtttctacttcgatattctcctgtgctagaaaagatg 3374210  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 3353406 - 3353475
Alignment:
Q  169 aggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaa 238  Q
    |||||| |||||||| ||| |||||||||||||||| |||||||| |||||  |||| || |||||||||    
T  3353406 aggcatttctggtatcaaatctgaattagattttatcagatttcttcttctacattctccaatgctagaa 3353475  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 3342702 - 3342776
Alignment:
Q  170 ggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatg 244  Q
    |||||||||||||  ||| ||||||||||||||||   |||||||||||| ||||| |||   ||||||||||||    
T  3342702 ggcatctctggtaccaaatctgaattagattttatccaatttctacttctatattctcctgatctagaaaagatg 3342776  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 1794138 - 1794187
Alignment:
Q  189 ctgaattagattttatgagatttctacttctctattcgcctatgctagaa 238  Q
    |||||||||||||||| |||||||||||||| ||||| ||| | ||||||    
T  1794138 ctgaattagattttatcagatttctacttctatattctcctgtcctagaa 1794187  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 257
Target Start/End: Complemental strand, 4333672 - 4333563
Alignment:
Q  148 agtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatggaa 247  Q
    |||||||||||||  ||| || |||||||||||||   |  |||||||| |||| || |||||||||||||| ||||| |   ||||||||||||||       
T  4333672 agtgcgacatgtgacgatagatggcatctctggtacccagtctgaattaaatttgatcagatttctacttctatattctctggtgctagaaaagatgatt 4333573  T
Q  248 gtgaagcctg 257  Q
    ||||||||||    
T  4333572 gtgaagcctg 4333563  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 6599755 - 6599659
Alignment:
Q  148 agtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatg 244  Q
    |||||||||||||   || || |||||||||||||| ||| |||| ||||| || || || ||| ||||||| ||||| ||| ||||||||| ||||    
T  6599755 agtgcgacatgtgagaatagatggcatctctggtatcaaacctgagttagacttcatcagctttatacttctatattctcctgtgctagaaaggatg 6599659  T

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Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 93 - 257
Target Start/End: Original strand, 20936082 - 20936246
Alignment:
Q  93 cacctgcctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctga 192  Q
    |||||||  ||| ||||||||||||  |||||| || |||| |||| ||||| | |||||||||||||  ||| || ||||||| |||||  |||   ||    
T  20936082 cacctgctgcctattgttgggaaaaaatcttttcggcgccagccatgcccattcgagtgcgacatgtgacgatagatggcatctttggtaacaaattgga 20936181  T
Q  193 attagattttatgagatttctacttctctattcgcctatgctagaaaagatggaagtgaagcctg 257  Q
    |||||||||||| | |||||||||||| ||||| ||| ||||||||||||||   ||||||||||    
T  20936182 attagattttatcaaatttctacttctatattctcctgtgctagaaaagatgactgtgaagcctg 20936246  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 244
Target Start/End: Original strand, 20954323 - 20954474
Alignment:
Q  93 cacctgcctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctga 192  Q
    |||||||| ||| |||||||||| || | |||| ||  ||| |||| ||||| |||||||||||||||  |||||| ||||||| |||||  ||    ||    
T  20954323 cacctgccgcctattgttgggaagatatattttcggcaccagccatgcccattcaagtgcgacatgtggcgattgatggcatctttggtaccaatttgga 20954422  T
Q  193 attagattttatgagatttctacttctctattcgcctatgctagaaaagatg 244  Q
    |||||||||||| | |||||||||||| ||||| || |||||||||||||||    
T  20954423 attagattttatcaaatttctacttctatattctcccatgctagaaaagatg 20954474  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 99 - 244
Target Start/End: Original strand, 20924478 - 20924623
Alignment:
Q  99 cctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattaga 198  Q
    |||||| |||||||||| || |||||| |||||||   || | | || || ||| |||||||  |||  ||| |||||||||||  ||| ||||||||||    
T  20924478 cctcctattgttgggaagatatcttttcggagccagatatgctcctcaaattgcaacatgtggagatacaagacatctctggtaccaaatctgaattaga 20924577  T
Q  199 ttttatgagatttctacttctctattcgcctatgctagaaaagatg 244  Q
    |||||| |||||||||||||||||||| ||| ||||  ||||||||    
T  20924578 ttttatcagatttctacttctctattcacctgtgctcaaaaagatg 20924623  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 257
Target Start/End: Original strand, 39275231 - 39275388
Alignment:
Q  100 ctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagat 199  Q
    ||||| |||||||||| ||  |||||  | |||| |||| ||||||||||| |||||||||   || |  |||||| |||| || ||| |||||||||||    
T  39275231 ctcctattgttgggaagataccttttcagggccagccatgcccatccaagttcgacatgtgggcataggtggcatcgctggcatcaaatctgaattagat 39275330  T
Q  200 tttatgagatttctacttctctattcgcctatgctagaaaagatggaagtgaagcctg 257  Q
    ||||| | |||||| ||  | ||||| |||||||||||||| |||   ||||||||||    
T  39275331 tttatcaaatttcttctcatgtattctcctatgctagaaaaaatgattgtgaagcctg 39275388  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 21238958 - 21239013
Alignment:
Q  189 ctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatg 244  Q
    |||| ||||||||||| ||||||||||||||| |||| |||||| |||||||||||    
T  21238958 ctgagttagattttatcagatttctacttctcaattctcctatgttagaaaagatg 21239013  T

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