View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850_high_6 (Length: 650)
Name: NF7850_high_6
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 18 - 631
Target Start/End: Original strand, 26496375 - 26496999
Alignment:
| Q |
18 |
gaaatatggggcgaatcgcctactatcaattttgtttagattttgtctcatcatgtcacgcnnnnnnngttcaaccattgcactatgatacaatcacatt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26496375 |
gaaatatggggcgaatcgcctactatcaattttgtttagattttgtctcatcatgtcacgctttttttgttcaaccattgcactatgatacaatcacatt |
26496474 |
T |
|
| Q |
118 |
atcatgtcatcgaaatttatttaactaataactggtggctataaatttgataaatctatgaggttgattaatcatatgagtttattgtacttacagatgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |
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| T |
26496475 |
atcatgtcatcgaaatttatttaactaataactggtggctataaatttgataaatctatgaggttgattactcgtatgagtttattgtgcttacagatgc |
26496574 |
T |
|
| Q |
218 |
ttgctatgaagcga-----------gggacacgtccgagctttagcgagcctttcttgagggcacctgtgcctttaggaatgtagatggtctacaatctc |
306 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26496575 |
ttgctatgaagcgatatctcttggagggacacgtccgagctttagcgagcctttcttgagggcacctgtgcctttaggaatgtagatggtccacaatctc |
26496674 |
T |
|
| Q |
307 |
ccaagcacgagtcttagacaagatgaagtggtgagggcgtctgaacgagttgggttattttgaagattgctagggtgagtcgtttggtatatgatcagac |
406 |
Q |
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|||| |||||||||||| ||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26496675 |
ccaaacacgagtcttaggcaagacgaagtggtgagggcgtatgaacgagttggcttattttgaagattgctagggtgagtcgtttggtatatgatcaaac |
26496774 |
T |
|
| Q |
407 |
gacttagatttcatgacctttcgttggtagtgacgtgttcgaatccttgcgcttgttgacacgtgtctccaatcgctgttaaatctagcacaattttcga |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||| |
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| T |
26496775 |
gacttagatttcatgacctttcgttggtagtgacgtgttcgaatccttgcgcttgttgacacatgtctccaatcgctgttaaatccagcatgattttcga |
26496874 |
T |
|
| Q |
507 |
ggtgactttaaatgatgggtttataaagggttttgtctcttctcttcttccatttttcatttaccctttcttcgcnnnnnnngcttctggactttctcct |
606 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
26496875 |
ggcgactttaaatgatgggtttataaagggttttgtctcttctcttcttccatttttcatttaccctttcttcgctttttttgcttccggactttctcct |
26496974 |
T |
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| Q |
607 |
tcaactacgcgagctctcttcggtt |
631 |
Q |
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||||| ||||||||||||||||||| |
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| T |
26496975 |
tcaacgacgcgagctctcttcggtt |
26496999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 17755694 - 17755636
Alignment:
| Q |
165 |
tgataaatctatgaggtt--gattaatcatatgagtttattgtacttacagatgcttgc |
221 |
Q |
| |
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|||||||||||||||||| ||||| |||||| ||||||||||||| ||||||||||| |
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| T |
17755694 |
tgataaatctatgaggttttgattactcatataagtttattgtactgtcagatgcttgc |
17755636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 17764681 - 17764623
Alignment:
| Q |
165 |
tgataaatctatgaggtt--gattaatcatatgagtttattgtacttacagatgcttgc |
221 |
Q |
| |
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|||||||||||||||||| ||||| |||||| ||||||||||||| ||||||||||| |
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| T |
17764681 |
tgataaatctatgaggttttgattactcatataagtttattgtactgtcagatgcttgc |
17764623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 49022472 - 49022409
Alignment:
| Q |
230 |
gagggacacgtccgagctttagcgagcctttcttgagggcacctgtgcctttaggaatgtagatg |
294 |
Q |
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|||||||||||||| |||| | |||||||| |||| |||||||||| |||||||||||||||| |
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| T |
49022472 |
gagggacacgtccgggcttcaaggagccttt-ttgaaggcacctgtgtttttaggaatgtagatg |
49022409 |
T |
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