View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850_low_1 (Length: 1281)
Name: NF7850_low_1
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 1135; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 1135; E-Value: 0
Query Start/End: Original strand, 7 - 1262
Target Start/End: Original strand, 16066900 - 16068165
Alignment:
| Q |
7 |
atggacatcaccaaaaatgtatggcaatcaacgcacaagtgcttcattattccctgctcttaattgaaagattatattcccacaaaaaggaatttaatta |
106 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16066900 |
atggccatgaccaaaaatgtatggcaatcaacgcacaagtgcttcattattccctgctcttaattgaaagattatattcccacaaaaaggaatttaatta |
16066999 |
T |
|
| Q |
107 |
gcattgaggccaattgattgaaagaatgatgaatggagaccaagaaatttgatctatgcaaaagtggccgacccaaatgttgaaggaaagttaactacga |
206 |
Q |
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| T |
16067000 |
gcattgaggccaattgattgaaagaatgatgaatggagaccaagaaatttgatctatgcaaaagtggccgacccaaatgttgaaggaaagttaactacga |
16067099 |
T |
|
| Q |
207 |
aaaaagtgttgaaggaaaactaataataaatattcacaaaatggtttcttttataaaatagaatcaatagattgaacagagggttgccctttcaaaagga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16067100 |
aaaaagtgttgaaggaaaactaataataaatattcacaaaatggtttcttttataaaatagaatcaatagattgaacagagggttgccctttcaaaagga |
16067199 |
T |
|
| Q |
307 |
ataactatcaattcctctaaaggacagtgaatagtaagtcaaattaaaatatttgtgattgatgagggtaggca-cannnnnnnnncctagcaacttttc |
405 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| ||||| || |||||||||||||| |
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| T |
16067200 |
ataactatcaattcctctaaagggtagtgaatagtaagtcaaatttaaatattggtgattgatgagggcaggcatcattttttttgcctagcaacttttc |
16067299 |
T |
|
| Q |
406 |
tgcctataaaagggtagcaatgtataacatattatagcaaaatagagcaaacattggtataacttataatggataagttaatttatggtcaaagagtctt |
505 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16067300 |
tacctataaaagggtagcaatgtataacatattatagcaaaatagagcaaacattggtataacttataatggataagttaatttatggtcaaagagtctt |
16067399 |
T |
|
| Q |
506 |
tcatggagaggttgaaagtgagatgaagccaaggatgacttgccggtataatagtaatttgccacaaatctagatagctattagctatgtttggatgggc |
605 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16067400 |
tcatggagaggttgaaagtgagatgaagccaaggatgacttgccggtataatagtaatttgccacaaatctagatagctattagctatgtttggatgggc |
16067499 |
T |
|
| Q |
606 |
ggtgagattaacaaaattacagcagcattatgattttgttgatgctttaaagtgtagtttttatcaaaattacagtggttcactgtaattatgagaatct |
705 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16067500 |
ggtgagattaacaaaattacagcagcattgtgattttgttgatgctttaaagtgtagtttttatcaaaattacagtggttcactgtaattatgagaatct |
16067599 |
T |
|
| Q |
706 |
catcgtcaatctaaatatgcatttaattttatttccggcaggtcatccttcggctatatttggctttcttcctctcatgtaagactcttacgaccttctc |
805 |
Q |
| |
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|| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16067600 |
caccgtcaatctaaatatgcatttagtttcatttccggcaggtcatccttcggctatatttggctttcttcctctcatgtaagactcttacgaccttctc |
16067699 |
T |
|
| Q |
806 |
atatgggctgatcaataaatactaacttttgcataatgtttttggagaaattaatatggcttgaatcaagtagacaaaatgtgcaaccaaaatatttgtg |
905 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16067700 |
atatgggctgatcaataaatactaacttttgcataatgttattggagaaattaatatggcttgaatcaagtagacaaaatgtgcaaccaaaatatttgtg |
16067799 |
T |
|
| Q |
906 |
tacaaacaaaatgtgcaaatttgacttagataggtcgatatttcactagtcaaacccactagctagcatgttttatatattagttcatta---------a |
996 |
Q |
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| T |
16067800 |
tacaaacaaaatgtgcaaatttgacttagataggtcgatatttcactagtcaaacccactagctagcatgttttatatattagttcattataaagaatta |
16067899 |
T |
|
| Q |
997 |
agttaatctatactctaaccatatgcaattgttagtacttatgatcttattttacttatctctatactctattgattatttattctaattcatagtttga |
1096 |
Q |
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| T |
16067900 |
agttaatctatactctaaccatatgcaattgttagtacttatgatcttattttacttatctctatactctattgattatttattctaattcttagtttga |
16067999 |
T |
|
| Q |
1097 |
ttcaacttagctctttatttattgtgtcaaatggtcatgcatgttttaacctattaagaatgttggcgtacccatcatttctcccacatataccttaact |
1196 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16068000 |
ttcaaattagctctttatttattgtgtcaaatggtcatgcatgttttaacctattaagaatgttggcgtacccatcatttctcccacatgtaccttaact |
16068099 |
T |
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| Q |
1197 |
ttctatttcttcgttacttgattggtttggtttttgatatagtatgttacttggtgttgagctaaa |
1262 |
Q |
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| T |
16068100 |
ttctatttcttcgttacttgattggtttggtttttgatatagtatgttacttggtgttgagctaaa |
16068165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 497 - 560
Target Start/End: Original strand, 16072544 - 16072607
Alignment:
| Q |
497 |
aagagtctttcatggagaggttgaaagtgagatgaagccaaggatgacttgccggtataatagt |
560 |
Q |
| |
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| T |
16072544 |
aagagtctttcatggagaggttgaaagtgaaatggagccaaggatgacttgccggtatattagt |
16072607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 740 - 810
Target Start/End: Original strand, 16072647 - 16072717
Alignment:
| Q |
740 |
ccggcaggtcatccttcggctatatttggctttcttcctctcatgtaagactcttacgaccttctcatatg |
810 |
Q |
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| T |
16072647 |
ccggcaggtcatccttcggctatatttggctttcttcctttcatgtgagactctcgagaccttatcatatg |
16072717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 635 - 716
Target Start/End: Original strand, 7873090 - 7873171
Alignment:
| Q |
635 |
atgattttgttgatgctttaaagtgtagtttttatcaaaattacagtggttcactgtaattatgagaatctcatcgtcaatc |
716 |
Q |
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||||||||||||| ||| |||| |||| |||| |||||||||||||||||||| || |||||| || |||| |||||||| |
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| T |
7873090 |
atgattttgttgaagctataaaatgtaacttttgtcaaaattacagtggttcaccgtgattatgttaaactcaccgtcaatc |
7873171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 638 - 687
Target Start/End: Complemental strand, 36862202 - 36862153
Alignment:
| Q |
638 |
attttgttgatgctttaaagtgtagtttttatcaaaattacagtggttca |
687 |
Q |
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||||||| || ||| |||||||||| |||||||||||| ||||||||||| |
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| T |
36862202 |
attttgtcgaagctctaaagtgtagcttttatcaaaatcacagtggttca |
36862153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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