View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850_low_10 (Length: 662)

Name: NF7850_low_10
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850_low_10
NF7850_low_10
[»] chr3 (4 HSPs)
chr3 (179-402)||(44989526-44989749)
chr3 (1-138)||(44989747-44989868)
chr3 (457-491)||(44989495-44989529)
chr3 (524-632)||(54417046-54417153)
[»] chr5 (1 HSPs)
chr5 (525-632)||(16570521-16570627)
[»] chr8 (2 HSPs)
chr8 (524-630)||(26835618-26835723)
chr8 (539-630)||(13580397-13580487)
[»] chr4 (1 HSPs)
chr4 (524-625)||(36071581-36071681)
[»] chr2 (1 HSPs)
chr2 (524-630)||(40876949-40877054)
[»] chr6 (2 HSPs)
chr6 (578-630)||(9815749-9815801)
chr6 (534-630)||(12174320-12174415)
[»] chr1 (1 HSPs)
chr1 (578-630)||(8246797-8246849)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 2e-91; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 179 - 402
Target Start/End: Complemental strand, 44989749 - 44989526
Alignment:
Q  179 aaaacaatatgactgacttaatttataagatatnnnnnnngtagatttagataagatataattgcttgtatcttttatcttgactatgacataaaccata 278  Q
    |||||||||||||||||||||||||||||||||       || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  44989749 aaaacaatatgactgacttaatttataagatataaaaaaagttgatttagataagatataattgcttctatcttttatcttgactatgacataaaccata 44989650  T
Q  279 acgtgacttaatttaaaagtagaatcgtatttgattgaatgtacaatttttctattctatatggtggaacacactttcagcactcgttacatgtttgggg 378  Q
    |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  44989649 acgttacttaatttaaaaggataatcgtatttgattgaatgtacaatttttctattctatatggtgttacacactttcagcactcgttacatgtttgggg 44989550  T
Q  379 gagcaacagagcacctatacatga 402  Q
     |||||||||||||||||||||||    
T  44989549 cagcaacagagcacctatacatga 44989526  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 44989868 - 44989747
Alignment:
Q  1 agaatgacagacatataatgaggtttcttggatagaccacagacagagttgcataccagatcaaaataaaacctagccgagcccaactgagactccctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||  |||||               ||||||||||||||||    
T  44989868 agaatgacagacatataatgaggtttcttggatagaccagagacatagttgcataccagatc--aataa--------------taactgagactccctaa 44989785  T
Q  101 agacacaaagtcctagagcaatctcaccgaatagcaaa 138  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44989784 agacacaaagtcctagagcaatctcaccgaatagcaaa 44989747  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 491
Target Start/End: Complemental strand, 44989529 - 44989495
Alignment:
Q  457 atgaatttgtaccctttaattatttgaaagtattc 491  Q
    |||||||||||||||||||||||||||||||||||    
T  44989529 atgaatttgtaccctttaattatttgaaagtattc 44989495  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 524 - 632
Target Start/End: Original strand, 54417046 - 54417153
Alignment:
Q  524 ataatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataat 623  Q
    |||||||| ||||| ||||||  ||||||   |||||||| | ||||||| ||||||  |||||  || ||||||| | |||||| ||||||||||||||    
T  54417046 ataatcaaaattctttaaaaacatattttcagtagaattaatcaaagtgaattaaaag-gaaatgtatctatatagcactaactaccaagtaaaaataat 54417144  T
Q  624 aaatttgat 632  Q
    || ||||||    
T  54417145 aattttgat 54417153  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 525 - 632
Target Start/End: Original strand, 16570521 - 16570627
Alignment:
Q  525 taatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataata 624  Q
    |||||||  |||||||||||| ||||||| ||||||||| | ||||||| || ||||||||||  || ||||| |||  |||||  ||||||||||||||    
T  16570521 taatcaaagttctctaaaaatatatttttaatagaattaatcaaagtgaatt-aaaaagaaatatatctatatggtaccaactaataagtaaaaataata 16570619  T
Q  625 aatttgat 632  Q
    | ||||||    
T  16570620 attttgat 16570627  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 524 - 630
Target Start/End: Original strand, 26835618 - 26835723
Alignment:
Q  524 ataatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataat 623  Q
    ||||||||  |||||||||||| ||||||  ||||||||| | ||||  | ||||||| |||||  |||||||| ||| ||||||| |||||||||||||    
T  26835618 ataatcaaagttctctaaaaatatattttcaatagaattaataaaagaaaattaaaaa-gaaatatatttatattgtactaactattaagtaaaaataat 26835716  T
Q  624 aaatttg 630  Q
    || ||||    
T  26835717 aattttg 26835723  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 539 - 630
Target Start/End: Original strand, 13580397 - 13580487
Alignment:
Q  539 taaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataataaatttg 630  Q
    ||||||| ||||||  ||||||||| | |||| || ||||||| |||||  ||||||||| || ||||||| ||||||||||||||| ||||    
T  13580397 taaaaatatattttcaatagaattaatcaaagcgaattaaaaa-gaaatatatttatataatactaactattaagtaaaaataataattttg 13580487  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 524 - 625
Target Start/End: Original strand, 36071581 - 36071681
Alignment:
Q  524 ataatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataat 623  Q
    ||||||||  |||||||||||| ||||||  || |||||| | ||||  | ||||||| |||||  || ||||||||| |||||||||||||||||||||    
T  36071581 ataatcaaagttctctaaaaatatattttcaattgaattaatcaaagaaaattaaaaa-gaaatatatctatatagtactaactatcaagtaaaaataat 36071679  T
Q  624 aa 625  Q
    ||    
T  36071680 aa 36071681  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 524 - 630
Target Start/End: Original strand, 40876949 - 40877054
Alignment:
Q  524 ataatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataat 623  Q
    ||||||||| |||| ||||||| ||||||  ||||||||| |  ||   ||||||||| |||||  ||||||||| || |||||| ||||||||||||||    
T  40876949 ataatcaaggttctataaaaatatattttcaatagaattaatccaaacaagttaaaaa-gaaatatatttatataatactaactaccaagtaaaaataat 40877047  T
Q  624 aaatttg 630  Q
    || ||||    
T  40877048 aattttg 40877054  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 578 - 630
Target Start/End: Original strand, 9815749 - 9815801
Alignment:
Q  578 aaaaagaaatccatttatatagtattaactatcaagtaaaaataataaatttg 630  Q
    ||||||||||  || ||||||||||||||||  ||||||||||||||| ||||    
T  9815749 aaaaagaaatatatctatatagtattaactactaagtaaaaataataattttg 9815801  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 630
Target Start/End: Complemental strand, 12174415 - 12174320
Alignment:
Q  534 ttctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataataaatttg 630  Q
    |||||||||||| ||||||| ||| ||||| | |||  || ||||||| |||||  || ||||||||| ||||||  ||||||||||||||| ||||    
T  12174415 ttctctaaaaatatatttttaatataattaatcaaaacgaattaaaaa-gaaatatatctatatagtactaactactaagtaaaaataataattttg 12174320  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 578 - 630
Target Start/End: Original strand, 8246797 - 8246849
Alignment:
Q  578 aaaaagaaatccatttatatagtattaactatcaagtaaaaataataaatttg 630  Q
    ||||||||||  || ||||||||| ||||||| ||||||||||||||| ||||    
T  8246797 aaaaagaaatatatctatatagtactaactattaagtaaaaataataattttg 8246849  T

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