View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7850_low_15 (Length: 547)
Name: NF7850_low_15
Description: NF7850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850_low_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 19 - 538
Target Start/End: Complemental strand, 12683180 - 12682655
Alignment:
| Q |
19 |
tcaacctcagtttttggccacctagaagaacttgcatgcatcatactctcaccattgttatcacttttcgcaacttccatattcgtcacttgctgctgtt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12683180 |
tcaacctcagtttttggccacctagaagaacttgcatgcatcatactctcaccattgttatcacttttcgcaacttccatattcatcacttgctgctgtt |
12683081 |
T |
|
| Q |
119 |
gtacctgaacctgctgttgctgctgctgatgttgtggcaatggtgaagcctgaggaatgactgatgtttgttgttgcactgttacagttggattttgaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12683080 |
gtacctgaacctgctgttgctgctgctgatgttgtggcaacggtgaagcctgaggaatgactgatgtttgttgttgcactgttacagttggattttgaac |
12682981 |
T |
|
| Q |
219 |
ttgctgcggtgtaggtattgctggtatcggtatcggcaatggtgctgctgctgctggcaacggtactggtgttggtgttg------gtgtcggtttcggt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12682980 |
ttgctgcggtgtaggtattgctggtatcggtattggcaatggtgctgctgctgctggcaacggtactggtgttggtgttggtgttggtgtcggtttcggt |
12682881 |
T |
|
| Q |
313 |
gttggggttggtgtagtttcttgcggcgcttgttgctgctgaggaacaatggtactgttgttcaatacaggaggaacaagaatttgttgttcttgttgtt |
412 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12682880 |
gttggggttggtatagtttcttgcggcgcttgttgctgctgaggaacaatggtgctgttgttcaatacaggaggaacaagattttgttgttcttgttgtt |
12682781 |
T |
|
| Q |
413 |
cagcaatcttctgcaaaaaagccataacagcagcatctttggtagcagcaagagatctctcttgagcaagaatttccctttctctattaatcctttgcat |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12682780 |
cagcaatcttctgcaaaaaagccataacagcagcatctttagtagcagcaagagatctctcttgagcaagaatttccctttctctattaatcctttgcat |
12682681 |
T |
|
| Q |
513 |
ctcttgcaacctccaagcttcttctc |
538 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
12682680 |
ctcttgcaacctccaagcttcttctc |
12682655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 518
Target Start/End: Original strand, 44553835 - 44553948
Alignment:
| Q |
405 |
ttgttgttcagcaatcttctgcaaaaaagccataacagcagcatctttggtagcagcaagagatctctcttgagcaagaatttccctttctctattaatc |
504 |
Q |
| |
|
||||||||| || || || ||||| |||| ||| || ||||||||||| | |||| | |||||| || || ||||| |||||||| |||||||| || |
|
|
| T |
44553835 |
ttgttgttcggctattttttgcaagaaagacatgactgcagcatcttttgctgcagttatagatctttcgtgtgcaagcatttccctctctctattgatt |
44553934 |
T |
|
| Q |
505 |
ctttgcatctcttg |
518 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
44553935 |
ctttgcatctcttg |
44553948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University